Conserved Protein Domain Family
RING-H2_RNF103

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cd16473: RING-H2_RNF103 
RING finger, H2 subclass, found in RING finger protein 103 (RNF103) and similar proteins
RNF103, also known as KF-1 or zinc finger protein 103 homolog (Zfp-103), is an endoplasmic reticulum (ER)-resident E3 ubiquitin-protein ligase that is widely expressed in many different organs, including brain, heart, kidney, spleen, and lung. It is involved in the ER-associated degradation (ERAD) pathway by interacting with components of the ERAD pathway, including Derlin-1 and VCP. RNF103 contains several hydrophobic regions at its N-terminal and middle regions, as well as a C-terminal C3H2C3-type RING-H2 finger.
Statistics
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PSSM-Id: 438136
Aligned: 25 rows
Threshold Bit Score: 64.2173
Created: 6-May-2013
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H H C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structures of other RING-H2 fingers with bound zinc
  • Comment:C3H2C3-type RING-H2 finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-H-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #  #                                   # #  #  #             #  #       
O00237       615 MLHCTECVVCLENFEn---------------------GCLLMGLPCGHVFHQNCIVMWLAg--gRHCCPVCRWPSYKK 669  human
P30631        66 QKEDATCAICLDNLQnnvdipedhvikeelkidpttfGTTVIVMPCKHRFHYFCLTLWLEa---QQTCPTCRQKVKTD 140  Caenorhabditis e...
XP_002175986 178 TPEEELCVVCLENYQg---------------------NDFIRILPCGHIFHAHCLDIWMTr--tFANCPLCKADYSML 232  Schizosaccharomy...
KFG53055     506 SNEGGRCAICMDAYRe---------------------GASLRYLPCFHTYHQACIDVWLSq---NGRCPICKENVLSL 559  Toxoplasma gondi...
NP_510498    241 GDDPDTCAICLESFAs---------------------GEKLRHLPCRHVFHCNCIDVWLTq--tRKICPLCKRKIGTD 295  Caenorhabditis e...
KRX01194     911 LEIEEQCPICYSDFCe---------------------GTEVKQLKCEHIYHPNCIDVWLRk---NASCPVCRENLKQG 964  Pseudocohnilembu...
EER02531     248 RYSSNDCAICYTDFQd---------------------GDRIRGLRCGHDFHAACVDMWLLe--hQNRCPLCLRLVGPM 302  Perkinsus marinu...
KJE97237     696 HDDEAQCPICMECVAa--------------------gDVMVRLPSCGHVFHVSCVGLWLEs---HTACPMCRCEVLKR 750  Capsaspora owcza...
EGD76089      62 MLDQGQCSICLMTYFi---------------------GDTVRVLSCEHVFHAHCVELWLNtdlpRSRCPLCKREHSWA 118  Salpingoeca rosetta
ELU02315      56 KSQAETCPVCLDDFSp---------------------KDKLAVCECTHIFHTKCLILWLNq---SPTCPLCKSNLGSG 109  Capitella teleta

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