Conserved Protein Domain Family
C6

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smart01048: C6 
This domain of unknown function is found in a C. elegans protein.
It is presumed to be an extracellular domain. The C6 domain contains six conserved cysteine residues in most copies of the domain. However some copies of the domain are missing cysteine residues 1 and 3 suggesting that these form a disulphide bridge.
Statistics
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PSSM-Id: 214994
Aligned: 38 rows
Threshold Bit Score: 40.5584
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
NP_503200     433 CSPTAVTLGIGDGLTpqrFID--VTYSDFASTPITGSLETTSTMKITCTAm-PGYNVLMQLNSnpnstPVENM-GGlP-Q 507  nematode
NP_001122946 2085 aQNCSNLIAAPLTSTe-lGEN--ESNGQLILDHYINITTMERIVTITCYGgsATDNTTISFNG-----GSRTM--SgT-G 2153 nematode
NP_001122946 1281 CAQCSRLNAEAVSS-----ID--NSLQNGVTVMTLSTVNQCSVIQVTCSGitANERVTLL--------AATTSlVSgV-G 1344 nematode
NP_001122946 1520 CSQCGRAPIVSVGTG-----S--TYLNGFTTVVQSTDAQGCSLLFVKCQGmtSADAVALLSSG--------MPySSgF-G 1583 nematode
NP_001122946 2322 CKLCTNLPAIGLEPN---QLDanGRNGQFILDHVT-TATACRVIYLSCAGssASENSTILFNG-----GAQTMsNQg--- 2389 nematode
NP_001122946 1749 CSQCARLPIQSVNDT--------EFLNGFTTLTTSINAFGCMTVSMMCEGvlPSDPVSIVING------NYAEyANg--N 1812 nematode
NP_001122946 2693 saSCNTGFVTAVST------P--GYTSGFMTVDTT-TSGSIMSADITCASpvTSQTAALL--G-----SNNNQvSSgV-G 2755 nematode
NP_001122946 1978 CQSCGVLPMTSLHAF-----Y--PYWNGISTISIE-EESTCMTAVAACEGvtSSDTVAWIASG--------TIlSSgT-D 2040 nematode
NP_001122947 2565 CQLCPNMQAIALTSSqlvING--ATNGQLLLSHSVDQSSKCRIVVIKCRGenTNQNATIFFNS-------NGQsLSaMyG 2635 nematode
NP_001122946 2208 NTNCARNVMLTIP-------S--GYNAGYLSMNTI-SSETSLQVVMSCEAp-TGISESLLLSSt----GATSStGTpT-- 2270 nematode
NP_503200     508 SVTITLTCNSaDMIWNYVvef-mgAPFPRAITSMAC 542  nematode
NP_001122946 2154 QIVLTMTCSS-SGQWM---------RNGIGVETVAC 2179 nematode
NP_001122946 1345 SVSFNFTCNS-AASWM--------TAAGTIVDSVAC 1371 nematode
NP_001122946 1584 STTANLTCNA-DSQWI--------GRTSTAITSLAC 1610 nematode
NP_001122946 2390 ITSTVVTCTA-ASTWD---------WYGSAVGYASC 2415 nematode
NP_001122946 1813 VNYTDFACNS-QGQW--T------SSTFGVVTSVIC 1839 nematode
NP_001122946 2756 STFMTLTCNS-NSQWV--------TPDGTVITSLSC 2782 nematode
NP_001122946 2041 MINMTFTCNS-MSNWQ--------TSAGIVFSSLSC 2067 nematode
NP_001122947 2636 QVATSMACSS-SNTWQ---------RNGIEIDGVAC 2661 nematode
NP_001122946 2271 -TNMTLNCNS-ASQWVVSsasgtgIPVGTVITSIAC 2304 nematode
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