1VHN


Conserved Protein Domain Family
DUS_like_FMN

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cd02801: DUS_like_FMN 
Click on image for an interactive view with Cn3D
Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Statistics
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PSSM-Id: 239200
Aligned: 194 rows
Threshold Bit Score: 113.744
Created: 20-May-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1VHN_A; Thermotoga maritima TM0096 binds FMN and a sulfate ion; contacts at 3.5 A
  • Comment:the sulfate ion is thought to be coincident with the natural ligand binding site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                          #            
1VHN_A        6 KVGLAPXAgyTDSAFRTLAFEwg-----aDFAFSEXvsakgflxnsqk----teellpqphernVAVQIFgsepNELSEA 76  Thermotoga maritima
AAC67079     17 IMILAPMEdvTDTVFRNLIHLigsaegepHIYFTEFistkgilngskqsv-qhvflkpnelnrpLIAQIWgnvpEQFYRA 95  Borrelia burgdor...
BAB80981      2 KYYLAPMEgiTGFIYRNSYEKffg---giDKYFAPFvvpnsskslktke--lrdvlpennkginLVPQILtndsEGFILT 76  Clostridium perf...
CAD63076     21 FFTMAPMEavSNTVFRQVISHaa----apDTFFSEFvyaksitnpntkfpvhgrlyvaaaesqkPVVQLWgneaADFASA 96  Lactobacillus pl...
AAO78432      6 PIHFAPLQgyTEAIYRNAHDAffg---gvDTYYTPFvrlekgnfrrrdv---rgiepenngvphLIPQLIassaEKAEVI 79  Bacteroides thet...
O31546       13 FFVLAPMEdvTDVVFRHVVSEag----rpDVFFTEFtnsesychpdgkds-vrgrltftedeqpIVAHIWgdkpENFRKM 87  Bacillus subtilis
CAG37640      6 RLSLAPIRglTTASFRSLFCKhfa---gfNSSIAPFinpqkrasfdnkm--lkdvlpeanmvvpVIPQLLhnnaEDFIAL 80  Desulfotalea psy...
ZP_00533120   7 VIYLAPFQgiTTLTYREVYVRhfr---gvDKLYTPFytqiprsqavask--ikeleitaqnriqLVPQILskdaDEMLRF 81  Chlorobium phaeo...
ABB30503     24 PLMLAPMQglTNRALRALFINwv----rpDVVFTEFmrvnpggarqpiragdlrevaaveggvpLVVQLIghdhKALVAA 99  Geobacter metall...
ZP_01116945   4 TLLSSPLQgfTDYKFRNAFNHffg---giDTFYSPYirlngkmviknsy--qkdlllennseleVIPQIItndaEEFLFV 78  Polaribacter irg...
Feature 1                        ##                                        # #                  
1VHN_A       77 ARIlse-kyKWIDLNAGCPVRKVVKEGAGGALlkdlRHFRYIVRELRKSVs---gKFSVKTRLGwekn---eveEIYRIL 149 Thermotoga maritima
AAC67079     96 IEIlgsmgfWGIDINMGCPKSKIIKKGVCSALinnkSLAKEIILASKEACarfnlPLSVKTRHGfsypevddwlGFLLGL 175 Borrelia burgdor...
BAB80981     77 AKKlkdlgyNEINLNLGCPSGTVVGKKRGSGFlahkEELDKFLEEIFKIDd---iKISIKTRLGmdkp--eefyELIKIY 151 Clostridium perf...
CAD63076     97 TAElrdrgfEAVDINMGCPDGTVIKNHGGSDLirnpQWAEDVIAAAKTSGl----AVSAKTRLGyskv--aeyhDWIATL 170 Lactobacillus pl...
AAO78432     80 LSLfiekgyQEVDINLGCPFPLLAKRHNGSGIlpypEEVKALLSIVTRYPq---iSFSVKMRLGweqp--declALAPIL 154 Bacteroides thet...
O31546       88 SIGmaelgfKGLDINMGCPVPNVAGNGKGSGLicrpAVAAELIQAAKAGGl----PVSVKTRLGytdv--dewrEWLTHI 161 Bacillus subtilis
CAG37640     81 AGRlaelgyKEINWNLGCPAPMVAKKKRGSGMlahpDLIVEFLEEVLPQIp---vKLSIKTRLGysnt--aqtkELLPRL 155 Desulfotalea psy...
ZP_00533120  82 AMHchekghTEINWNMGCPFPRVANKQRGSGMlphpDLVESILQKITPQLp---lNLSVKCRLGyeda--seidALIPIF 156 Chlorobium phaeo...
ABB30503    100 ARTaqeagaVHINLNLGCPYGRMTSGLTGGGMlhrpEALEELIPALRRAIa---gTFSVKVRAGydds--gqimTLLPLF 174 Geobacter metall...
ZP_01116945  79 SKYvralgyKELNWNLGCPYPMVTKRGMGSGLisdaEKINSILHKVHNESd---iLVSMKMRMGyenp--eeilGVLPIL 153 Polaribacter irg...
Feature 1                ## ##                                 ##                       #       
1VHN_A      150 VeegvDEVFIHTRTvvqsftGRAEWKALSvle-------krIPTFVSGDIftpeDAKRALees-gcDGLLVARGAIGRPW 221 Thermotoga maritima
AAC67079    176 Ei---DMLTVYPRLavnqskGPVNFDIFYelvklrnnlspsTLIIGNGDVlslkEARYYVdky-liDGIMFGRGIFDNLN 251 Borrelia burgdor...
BAB80981    152 NkypmEELIIHPRTrqdfygNKPNLEVFKdais-----lskNPVCYNGDIftleDHNKLVeefkevDKIMLGRGVLANPA 226 Clostridium perf...
CAD63076    171 LsqhvAVLTVHLRTkqemskVPAHFEVIDdlikmrdaiapeTLLQINGDVadyqAGVALAkahpglDGIMIGRGVFANPF 250 Lactobacillus pl...
AAO78432    155 NdlplRQITMHPRLgkqgykGEVDLQGFSafre-----vcqLPLVYNGDIhnleDIQRIStqfpslAGIMIGRGLLANPA 229 Bacteroides thet...
O31546      162 LkqdiANLSIHLRTraemskVDAHWELIPeikklrdevapdTLLTINGDIpdrqTGLKLAeqy-gvDGIMIGRGIFTNPF 240 Bacillus subtilis
CAG37640    156 DqfplTEIIIHARLgkqmykGTTDPDTFAeclq-----lsqHRIAYNGDIttleHFHELQtrfpqvEHWMIGRGALADPF 230 Desulfotalea psy...
ZP_00533120 157 NehriSELTVHARLgkqmysGEVNWSAIQklln-----nlkIPFAYNGDIfsveDYQKFKitfpqiNTLMIGRGLLTDPF 231 Chlorobium phaeo...
ABB30503    175 EeagvDFLVLHPRTvvqeytGHADHAVTAevvr-----qtrLPVIANGDVrsaaDGLRVLrkt-gaTGLMLGRGAIADPL 248 Geobacter metall...
ZP_01116945 154 DtyplKNIAIHARIgkqlykGGTDLEAFQkcld-----nskHKMYYNGDItsvvAFHKLQerfpsiDHWMIGRGLIGDPF 228 Polaribacter irg...
Feature 1                 
1VHN_A      222 IFKQIKDFLR 231 Thermotoga maritima
AAC67079    252 LFKPFSKHFL 261 Borrelia burgdorferi B31
BAB80981    227 LMNEILNNEF 236 Clostridium perfringens str. 13
CAD63076    251 AFESQPQSHD 260 Lactobacillus plantarum WCFS1
AAO78432    230 LALEYKENRT 239 Bacteroides thetaiotaomicron VPI-5482
O31546      241 AFEKEPKEHS 250 Bacillus subtilis
CAG37640    231 LAERIKGIGK 240 Desulfotalea psychrophila LSv54
ZP_00533120 232 LPAKLKGLEL 241 Chlorobium phaeobacteroides BS1
ABB30503    249 LFQRLRGKAP 258 Geobacter metallireducens GS-15
ZP_01116945 229 LPSMIKADTT 238 Polaribacter irgensii 23-P

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