6GEJ


Conserved Protein Domain Family
zf-HIT_ZNHIT1_like

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cd21437: zf-HIT_ZNHIT1_like 
HIT zinc finger found in zinc finger HIT domain-containing protein 1 (ZNHIT1) and similar proteins
The family includes ZNHIT1 and its yeast counterpart, the vacuolar protein sorting-associated protein 71 (Vps71p). ZNHIT1, also known as cyclin-G1-binding protein 1 (CGBP1), zinc finger protein subfamily 4A member 1 (ZNFN4A1), or p18 Hamlet, may have a role in inducing apoptosis through p53 signaling. It binds to Rev-erb beta and releases its inhibitory effect on the transcription of apolipoprotein C3 (APOC3) without affecting its DNA-binding activity. The yeast counterpart Vps71p, also referred to as SWR complex protein 6 (Swc6p), plays a role in the exchange of histone H2A for the H2A variant HZT1, a euchromatin-specific factor, leading to chromatin remodeling and transcriptional changes of targeted genes. It is indirectly involved in vacuolar protein sorting. Members of this family contain a zf-HIT domain characterized by a "treble-clef" fold through interleaved CCCC and CCHC zinc finger motifs, both of which bind a zinc ion.
Statistics
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PSSM-Id: 467791
Aligned: 108 rows
Threshold Bit Score: 49.9251
Created: 27-Apr-2023
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding siteoligomer
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:6GEJ; Saccharomyces cerevisiae VPS71 binds two Zn2+ ions.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 #  #        #  #            #   #   #    # 
6GEJ_S       235 FKVLPLITTCSICGGydSISSCVNCGNK--------ICSVSCFKLHNEtRCR 278 Saccharomyces cerevisiae S288C
Q4U9I8       860 GPARPQRHLCVICGFf-ANYKCRNCATRrieainsyYCSLRCLEVHNEtNCG 910 Theileria annulata
Q22A07       123 STKYPTRSFCSICGSl-SRYTCPRCGEK--------YCGIRCHDLHKEvFCL 165 Tetrahymena thermophila SB210
CDO57594     161 PKYPLRLRLCSVCGFk-SKYVCARCGYR--------YCSLACDETHKEtRCI 203 Geotrichum candidum
PVU96743     126 PPIYPPRKFCSICFFq-SSGKCIICGQN--------YCSLECMTLHNEtRCR 168 Smittium simulii
XP_002768829 105 ESRYPSVKICSVCLFl-AKYQCVRCGTL--------YCSKRCHDIHQEtQCI 147 Perkinsus marinus ATCC 50983
CUE93885     307 AKAPGGNMICAVCLKpgAQYVCVRCGVTr-------YCSPDCHEVHDEmRCL 351 Bodo saltans
KFD56119     117 SSRIPPRKICFICGNt-SRYTCPKCGIQ--------HCSLECNELHKDtRCL 159 pig whipworm
GAU87500     120 KSELPPLKLCSICSFp-CNMKCVVCEDK--------FCSKKCLETHRDiRCM 162 Ramazzottius varieornatus
CDR37336     158 MLMVPNKKLCSICGDn-APGSCVRCNSR--------VCSVKCTTVHNEtRCT 200 Cyberlindnera fabianii

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