1IOL,1EQU,1FDU,3M1A


Conserved Protein Domain Family
17beta-HSD-like_SDR_c

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cd05374: 17beta-HSD-like_SDR_c 
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17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.
Statistics
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PSSM-Id: 187632
Aligned: 54 rows
Threshold Bit Score: 219.024
Created: 28-Aug-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
1IOL_A      3 TVVLITGCSS-GIGLHLAVRLASDPsq---sFKVYATLRD-------LKTQgrlweaara--lacppgslETLQLDVRds 69  human
1EQU_A      3 TVVLITGCSS-GIGLHLAVRLASDPsq---sFKVYATLRD-------LKTQgrlweaara--lacppgslETLQLDVRds 69  human
AAN40900    2 NTWLISGCSN-GLGRCWTESVIHEYg-----DRVIGITRS-------VEAAqemtal--------ypehfIPCIADVRde 60  Pantoea agglomerans
XP_956661  38 LVWIVFGGTG-QIGRSLVKSCLNHGdfvtivGRIFESTREqma-aahLHHPqae--------------naFGTLCDVRdy 101 Neurospora crassa ...
XP_638815  10 KVWFITGVTG-GAGKALASRLLEIGg-----YKVAGTSRSke----kLNSLdgsli---------snkdfLRLQVNLIde 70  Dictyostelium disc...
XP_638696   9 RVWYITGCTS-GVAQALIEKIFANPn-----CKVAGTSRDik----kIEKLsfan-----------npnfLGLEIDIKne 67  Dictyostelium disc...
YP_053413   4 KVWFVTGAGQ-GIGLVVTKELLKKG------HQVIATSRNkd----kIEEAigan------------enlLALSVDIKdl 60  Mesoplasma florum L1
XP_641549   6 NIFFITGCSGiGFGGLMVKKLLSRG------DYVAATSRNkn---klIQDIgsne-----------ndqfLPIEMNLAde 65  Dictyostelium disc...
XP_642281   7 KVYFVSGASG-GIGLEMVIQLLGQG------MRVAATSRDkkkliqvLKERdnsli---------rddnfIAVEMDLSse 70  Dictyostelium disc...
XP_635256  10 KVFIVTGTST-GIGLSIVKKILDQK------LRVVAFTRSke----vVENQvkdyysksnknnidyqsslLAIQVDITnq 78  Dictyostelium disc...
Feature 1                                                   #                                 
1IOL_A     70 KSVAAARERVte--grVDVLVCNAGLGLLGPLEALGEDAVASVLEVNVVGTVRMLQAFLPDMKRRg-------------- 133 human
1EQU_A     70 KSVAAARERVte--grVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRg-------------- 133 human
AAN40900   61 EYLARILPQLakdfgiPSRVVTSAGYAQFGTLEDLSTEQLRQQFATNVEGTLMYKPELPLMRQLD--------------- 125 Pantoea agglomerans
XP_956661 102 ASVNRVIDQTldrfgrIDCIANCSGYGVIGACEDQDEHEIRNQFETNFMGTVHIIQASLPYFRELg-------------h 168 Neurospora crassa ...
XP_638815  71 KNVKESIEETikkfgkIDIIVNNAGQSIFGSVEEITDKEQRLLMDVLYFGPCNVIRSVLPHFRKRk-------------- 136 Dictyostelium disc...
XP_638696  68 QNIKDSVEKTikhfgdLTHVVNCAGYAVVGAIEEGTEQDYQDLFESLVFYPLRVIRSVLPHMRSKk-------------- 133 Dictyostelium disc...
YP_053413  61 KAVEKAVKSGvekfggIDVLLNNAGYSQMWTFEETDMEDVKGNIETNLIGTLNVTHAVIPVMRKQk-------------- 126 Mesoplasma florum L1
XP_641549  66 SNVKEAIEKCiekfgrIDILISNAAMGILAPLEETTDKDARTLFDINFFGPLNLIRNSLPYLRNNqflknnndnnnskln 145 Dictyostelium disc...
XP_642281  71 HSIKKAISECiekfktIYCVINNSGYAIKGTIEELSLKEIQENFNINCFGPMMVIHHFMPHLKCKpy------------s 138 Dictyostelium disc...
XP_635256  79 QSVENGVQEAlkvfgrIDVVVNNAGYSQWGNTEEVSDKDHRDIFEVNYFSVLNIIKSTLPILRKQk-------------- 144 Dictyostelium disc...
Feature 1             #               #   #                                                   
1IOL_A    134 SGRVLVTGSVGGLMGLPf---NDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLgspeevldrtdih 210 human
1EQU_A    134 SGRVLVTGSVGGLMGLPf---NDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLgspeevldrtdih 210 human
AAN40900  126 EARILLVSSMSGVACWPl---LGAYQMSKHAIEAMGQTLRHELEGTSIQVGVIQPGPYRTGWATTSAqrqp--------- 193 Pantoea agglomerans
XP_956661 169 GGRYIIFSSTSGALGVPg---LGPYCATKYAVEGLIEAMLYEVDAFNIKATLVEPGLVRRDEADTSMvprwghfl----- 240 Neurospora crassa ...
XP_638815 137 SGLIFNISSVIGGDPTNnvpfFSGYCAGKSAIHSMTQCLREEVKQFNINVCCILLGYLKTSFSSPLTtnq---------- 206 Dictyostelium disc...
XP_638696 134 FGYIFNVGSIAGINAHPr---YGAYASAKSALNSISQGLGADVKPFNIKVTCLVLGHFMTNFQNHVVsenalvsnm--ip 208 Dictyostelium disc...
YP_053413 127 HGHIYITSSAWGYGTVPy---NSVYAVVKFGLDGFAESISHELKTVGISISSIKPGGVRTNFLTSDSlqtgk-------- 195 Mesoplasma florum L1
XP_641549 146 GPRIIIIDSICGYSSLFn--gCSIYCSSKFALHAISETMSIELKPFNIHCCNIAPGYFQTSFLSSCLipdt--------- 214 Dictyostelium disc...
XP_642281 139 DPRIINVSSVVGFNGDLmn-rFPCYVSSKFALDGFTESISNDLKKYDIKCTTVKPGYFITPFNDHIIhskg--------- 208 Dictyostelium disc...
XP_635256 145 SGLILNVSSLIGHLPYPg---FSSYVASKFALTGLTLTLAKEVEPLGIKVVLLSPGVFKTDITHKQQfknlen------- 214 Dictyostelium disc...
Feature 1                                                                     
1IOL_A    211 tfhrfyqYLAHSKQVFrea----------aqnPEEVAEVFLTALRap----kPTLRYFTTERFL 260 human
1EQU_A    211 tfhrfyqYLAHSKQVFrea----------aqnPEEVAEVFLTALRap----kPTLRYFTTERFL 260 human
AAN40900  194 ---igseYDGEALKKRatcgf-------niedPKASLPYFWRMFNt------PEMPEMLATSAK 241 Pantoea agglomerans
XP_956661 241 ikpasepYSHATSPALhakrmvqwlgdkqptsAQKCADLVWQLGHcs----yPPLRLLLGSYAI 300 Neurospora crassa OR74A
XP_638815 207 ----ikdYNLKEKANDmnkqfq----nntpesPINFANFIIENSKhs----nIPQTIQFGKNPY 258 Dictyostelium discoideum AX4
XP_638696 209 eydtqnfWSKMITPFMkilt---------qgdVKKLADLVVNHYAnq---qeLPYNLFIGPKET 260 Dictyostelium discoideum AX4
YP_053413 196 --stieeYAAGRDEWVntvkswn---gyqdgnPQKYAEFIIGLTEkd---svPPMHIFAGRDSY 251 Mesoplasma florum L1
XP_641549 215 ---riaeYKDTHSFLDeivklng---srflgdLSKAVDVIIEISLsy----sPPNHVLVGSDAF 268 Dictyostelium discoideum AX4
XP_642281 209 ----eqpLTDHEKEILekynatk--pknngsdPIKGARAIVEISLnp----ePPLHLFLGSDSL 262 Dictyostelium discoideum AX4
XP_635256 215 --piadyYQKVSLQETfdslkky--edhakgsSDKFGDLVIEINQlyeqgkqLPSNFFIGSDAV 274 Dictyostelium discoideum AX4

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