3BBN


Conserved Protein Domain Family
bS6_chloro_cyano

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cd15487: bS6_chloro_cyano 
Click on image for an interactive view with Cn3D
30S ribosomal protein S6 of chloroplasts and cyanobacteria
bS6 is one of the components of the small subunit of the prokaryotic ribosome, a ribonucleoprotein organelle that decodes the genetic information in messenger RNA and forms peptide bonds to synthesize the corresponding polypeptides. Mitochondrial and chloroplastic ribosomes are similar to bacterial ribosomes. Ribosomes consist of a large and a small subunit, which assemble during the initiation stage of protein synthesis. Prokaryotic ribosomes consist of three molecules of RNA and more than 50 proteins. The small subunits of bacterial and eukaryotic ribosomes have the same overall shapes (with structural elements described as head, body, platform, beak and shoulder). The bacterial ribosomal protein S6 is important for the assembly of the central domain of the small subunit via heterodimerization with ribosomal protein S18.
Statistics
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PSSM-Id: 275387
Aligned: 24 rows
Threshold Bit Score: 113.457
Created: 25-Jul-2014
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
rRNA bindingS18 interface
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:rRNA binding site [nucleic acid binding site]
Evidence:
  • Structure:3BBN: Spinach chloroplastic ribosomal protein S6 interacts with 16S rRNA, contacts at 4 A
  • Comment:The 16S ribosomal RNA and its associated proteins form a part of the functionally relevant body of the 30S ribosomal subunit

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #                                             # # #                         
3BBN_F        61 GLRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRknkagetnnYLDGIYLLFTYFTKPE 140 spinach
WP_006528530   1 MIQAYEMMYILRPNLLEEQISESVNKYRDLLTENGATNIHIKLWGKRRLAYPIDK---------HQEGTYILMNYLATGQ 71  Gloeocapsa sp. ...
YP_007095140   1 MSDKYEIMYILRPDLSDEQADGAIEKYRAILETNGATEIEIQQRGKRRLAYLIGK---------NRDGIYVQVNYTGSGQ 71  Chamaesiphon mi...
YP_007166106   3 TTNTYELMFILRPDLSQEQVNQQMRKYRDLLKDLGAEKVSMEVWGKRRLAYEIQR---------FQEGVYILSYFTGDGS 73  Cyanobacterium ...
YP_007070864   2 STNNYELMYILRPDLGEEQVQEVSTKYKTMLQESGATDMQVQVRGKRHLAYPIQN---------FNDGIYIQVNFKADGS 72  Leptolyngbya sp...
YP_007173374   1 MLNNYETMFIIRPDLAEDQVSQEVNKYQDFLKERDVEDLTIRNHGKKRLAYKIDK---------HQDGIYVQMNYRVDGE 71  Dactylococcopsi...
NP_896083      3 QQPYYETMYILRPDIPEEEVETHVTKYREMVTEAGAEVLDNQMRGKRRLAYPISN---------HKEGIYVQLSHNGNGQ 73  Prochlorococcus...
WP_022607406   1 MIQSYETMYILRPDLAEERVGNQILKYRELLESYGATAMEIQNRGKRRLAYPIQK---------FQDGIYVQMNFDVTGE 71  Rubidibacter la...
O78447         3 KLNSYETLYIVKPELTEDSLAKLIESYQGLLLERGAKNIITQNRGRRTLKYMIKK---------YKDAHYVQMNYEGNGE 73  Guillardia theta
Q6B922         2 NLNKYETIYILQPNITESENLILINEYKALIKKYGGNNIVVQHKGRRHLNYNIKS---------YYDGIYVQINYTASSN 72  Gracilaria tenu...
Feature 1                        # #### 
3BBN_F       141 SISPLEAALVTDDDVIRSSSFKI 163 spinach
WP_006528530  72 QVAVVERAMRLSEEVIRYLTMKL 94  Gloeocapsa sp. PCC 73106
YP_007095140  72 EIAPLERAMRLSEDVIRYLSLKL 94  Chamaesiphon minutus PCC 6605
YP_007166106  74 QVAPLEKNMRLSEEVIRYLTMKQ 96  Cyanobacterium stanieri PCC 7202
YP_007070864  73 QIKTYERDMRLGEEVIRYLTMRM 95  Leptolyngbya sp. PCC 7376
YP_007173374  72 VIKALQRQMRLSENVIRFLTLTV 94  Dactylococcopsis salina PCC 8305
NP_896083     74 QVAVLEKAMRLSEDVIRYLTVKQ 96  Prochlorococcus marinus str. MIT 9313
WP_022607406  72 AIAPMERAMRLSEEVMRFMTLLS 94  Rubidibacter lacunae
O78447        74 VIQLLERAMKINESIVRFLTTAI 96  Guillardia theta
Q6B922        73 LVRILEKAMRLSQHVIRYMTIKN 95  Gracilaria tenuistipitata var. liui

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