4I6L,2ZFY,3VON,4DDG


Conserved Protein Domain Family
OTUB1

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cd22763: OTUB1 
Click on image for an interactive view with Cn3D
Ubiquitin Thioesterase Otubain-1
Otubain-1 is also called ubiquitin thioesterase OTUB1, deubiquitinating enzyme OTUB1, OTU domain-containing ubiquitin aldehyde-binding protein 1, or ubiquitin-specific-processing protease OTUB1. It is a deubiquitylase (DUB)/ubiquitin thioesterase (EC 3.4.19.12) that can specifically remove 'Lys-48'-linked conjugated ubiquitin from protein substrates. It is also capable of cleaving NEDD8 (neural-precursor-cell-expressed developmentally down-regulated 8), but not SUMO (small ubiquitin-related modifier) 1/2/3 and ISG15 (interferon-stimulated gene 15) conjugates. In addition, OTUB1 inhibits the DNA damage response independently of its catalytic activity by blocking ubiquitin transfer onto protein substrates via sequestration of E2 ubiquitin-conjugating enzymes. It also regulates many cancer-associated signaling pathways including MAPK, ERa, epithelial-mesenchymal transition (EMT), RHOa, mTORC1, FOXM1 and P53 to promote tumor cell survival, proliferation, invasiveness and therapeutic resistance. OTUB1 belongs to the OTU family of cysteine proteases that use a conserved cysteine, histidine, and an aspartate, as the catalytic triad. It is classified as a family C65 cysteine protease by MEROPS.
Statistics
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PSSM-Id: 438600
Aligned: 36 rows
Threshold Bit Score: 359.577
Created: 21-Sep-2020
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:polypeptide substrate binding site [polypeptide binding site]
Evidence:
  • Structure:4I6L: Human OTUB1 binds ubiquitin variant; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
4I6L_A         5 LVSERLELSVLYKEYAedDNIYQQKIKDLHKKYSYIRKTRPDGNSFYRAFGFSHLEALLDds--kELQRFKAVSAKSKED 82  Homo sapiens
XP_003384403  32 FIGDQEDIDILTKQYLqdDEVYQAKISDLKRKYKKLRRTRGDGNCFFRAFGYAYLEKQLEek--tDLDRFKSAVIQCRSS 109 Amphimedon quee...
XP_002161957  36 LVGELECVESLLHDYAsdDQVYQNKLKDLFHRYSHLRRTRGDGNCFYRAFGFKTLEACLVds--eLLERLCDVATSTKNK 113 Hydra vulgaris
OQV18202     139 FVAEKEDLSVLGDEYS--DPVYIAKIMDLKSKYQWLRRTRGDGNCFYRSLGFSMFENFMRagdkeKVEAMKRFMVECKDG 216 Hypsibius dujar...
XP_017485143  68 LVSETIIVDALHDDYAeeDDIYQQKVEDLKTNYSFIRKTRPDGNCFYRAFIFSYFESLFNde--dEQKRFSEICKETRRG 145 snowberry fruit...
XP_023344652  41 LISGLEDFSTLVADFQq-DQQFLAKIQQISQSYSKLRRTRPDGNCFFRAFGFRLFECLLEde--dRLNELLTVLAPCKDE 117 Eurytemora affinis
TRY75898      36 LVGNLEPVYSLEREFSh-DAVFMTKIGNLKGRYAELRRTRPDGNCFFRAVAYRYFELLLHrp--dEYERIKALLPRAKAQ 112 Tigriopus calif...
XP_009019946  36 LIGELEDLGNLETEMAs-DDIFVRKVQILKQRYSNFRRVRGDGNCFYRAFGFACLENFLDkp--eECLRFRDVATGCKDE 112 Helobdella robusta
KPM07187      34 LVADLMSISKLHEEYAeeDQVYQKKVKDLEEQYSHLRKTRPDGNCFYRAFIFAYFESLFGdq--tELNRFIEICHQTRKD 111 Sarcoptes scabiei
ACO10355      34 VGLEPEPLESLEKEFSh-DEAFREKAKRLSEEYEGFRRTRPDGNCFFRALGYRVFEILLQdk--eELLKFKQVIIPSKEI 110 Caligus rogercr...
Feature 1                                                                           # ###### #   
4I6L_A        83 LVSQGFTe-FTIEDFHNTFMDLIEQVekq--tsvADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVK 159 Homo sapiens
XP_003384403 110 LLSMGYPs-FTLEDFHDTFIDIVESVnkas-tssAELLQTFRDQGLSDYCVCYLRIITSGYLQSNAEFYSSFMDGYSTIK 187 Amphimedon quee...
XP_002161957 114 LVALGYSs-YTVEDFHETFMDVLEIAkke--knlQEIIKVYNEQGYSDYFVVFLRLMVSCYLQENEEFYSAFIEGHTNMK 190 Hydra vulgaris
OQV18202     217 LVELKYPa-LAIEDFMDVFNDQLTKVmet--ptdEELLRIFQEQGSSDFIVVWLRFLTVLQLRREPEFYQNFIENHSSVV 293 Hypsibius dujar...
XP_017485143 146 IEEVLGFpdFTIDEFYEYFRDITTGIlekrittaTELLNELDQPAVYDNIVVYLRLMTSYYLQKESDFFTNFIEGSGSIG 225 snowberry fruit...
XP_023344652 118 MVELGMPg-FTVEDFWENFIVTLESLkgkekislSDLEEIFNNEGQSNYLVVFLRLLVSKQLQKEADFYQNFIEGDIPLK 196 Eurytemora affinis
TRY75898     113 MIELGMPt-FTLEDFYDNFMDHVDRVgqah-mdaQQLFETFNEPGQSDYLVVFLRLLTSMQLQRNAEFYQNFMEGDKTVA 190 Tigriopus calif...
XP_009019946 113 LVSLGFPe-CTVEDFYTVFVETLDLInse--kslEKLLEVINDQSTSDYIVVFLRLLVSGHLQQNSDFYSCFLEDHKTMK 189 Helobdella robusta
KPM07187     112 ITSLGFPd-FTVDEFYDYFQEIISMIqngkikssDDLLIELDKSSVSDNIVVYLRLLTSYYLQKECEFFINFTEGSGQMS 190 Sarcoptes scabiei
ACO10355     111 MASLGFPsdTILEDFYDNFMEALDKCenm---nqKELTEMFNDQGVSDYIVVFLRLLTSMQLQKDADFYMNFMEDHLSVS 187 Caligus rogercr...
Feature 1                       ##  #                          #####               #         
4I6L_A       160 EFCQQEVEPMcKESDHIHIIALAQALsVSIQVEYMDRGeg-gtTNPHIFPEGs------ePKVYLLYRPGHYDILY 228 Homo sapiens
XP_003384403 188 EYCSTEVEPMyKEADHIHISALTSALgVSVGVVYMDRGeg-leVNEHVFPEGs------dPMIHLLYRPGHYDILY 256 Amphimedon queensla...
XP_002161957 191 DFCSQEVEPMaKESDHIHIIALTNILkTTVQVEYMDRGghkdsVNHHNFPDDgs-----kPAIYLLYRPGHYDILY 261 Hydra vulgaris
OQV18202     294 EFCQMEVEPMyKESDHIHIIAVASLLkIKIRVEYMDRGds-ptVIGHDFPEDda-----vPEIYLLYRPGHYDILY 363 Hypsibius dujardini
XP_017485143 226 DFCKREVEPMyKESDHIHIIALSSVFnVTVRVVYMDRGag-gkVNEHDFNPLhaegppaePRIHMLYRPGHYDVLY 300 snowberry fruit fly
XP_023344652 197 DFCATEVEPMfKESDHIHIIGLTAATgVSVRVIYLDREge--kVQNHDFPEGs------sPTINLIYRPGHYDIIY 264 Eurytemora affinis
TRY75898     191 EFCATEVEPMyNESDHIHITALTEATgISLRVIYLDRGsq-teASLHDFPDQgesa-attPLVHLLYRPGHYDVIY 264 Tigriopus californicus
XP_009019946 190 DFCSQEVEPMnKESDQIHVIALTTCTnIGVRIEYLDRSd---sLNNHVFPDNl------tPSITLMYRPGHYDILY 256 Helobdella robusta
KPM07187     191 EFCKREVEPMyKESDHVHIIALCSVLnVEIRVVYMDRGag-gkVNIHDFVPIhskndvnkPRIHLLYRPGHYDILY 265 Sarcoptes scabiei
ACO10355     188 EFCKAEVETMyKESDHIHVIALTAATgVNVRILYLDRGsn-keASPHDFPEGs------dPKVHLLYRPGHYDVLY 256 Caligus rogercresseyi

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