Conserved Protein Domain Family
NCBP3

?
pfam10309: NCBP3 
Nuclear cap-binding protein subunit 3
NCBP3 and NCBP1 form an alternative cap-binding complex in higher eukaryotes. NCBP3 binds mRNA, associates with components of the mRNA processing machinery and contributes to polyA RNA export.
Statistics
?
PSSM-Id: 463048
Aligned: 73 rows
Threshold Bit Score: 47.9107
Created: 23-Mar-2022
Updated: 17-Oct-2022
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
EER31105      83 IRPESLKIIG--VDNLSTKNIENYINYYINYnqieyeevdlitnelikgkkfqlkenqdcIDFKIEWINDESVNVTFRNI 160
XP_022165617  94 IQLNALHLHG--VMGMTTKDIIDYFDKY--------------------------------DPKFLEWVSNSECNVVWLDD 139
XP_007254217 123 IRLEALHMTG--LDDMSTQDVFGYFKEY--------------------------------PPAHIEWIDDTSCNVVWLDD 168
EDO39695      29 IRPDALLVFG--VNEMSTKDVFEYFKVY--------------------------------GPGSIEWIDDASCNVVWDDE 74 
ESO11593     222 IRYNCIHLKG--TNDMSTKDVFDFFKLF--------------------------------PPSAIEWIDDESCNVVWLEE 267
1_pfamImport   1 TRLEALHLHG--TDHMKTEDIFSLFSTH--------------------------------SPASIEWLTDKTCNAVWLDQ 46 
XP_018741539  62 LRPIALHLEGepISQLSTSRLMAYVGHTGV------------------------------KAKGIEWINDTRCVVVFESY 111
XP_001729822  71 IRFDALHLEGgpITQLSTSRLMAFVAYSGA------------------------------HAKGIEWINDTRCVIVFNSY 120
GAC74175      97 IRLDTLLIEGapITQLSTSRLFAYLTHYGA------------------------------QPLGLEWIDDQRCKVVFADE 146
EMD41008      87 IRNNAILLKGppIAHLPTSNIFAYAIHFDAH-----------------------------PDMALEWIDDTTCILVFPSR 137
EER31105     161 QDSNKVLKE 169
XP_022165617 140 RMPTKALLD 148
XP_007254217 169 VTSTRALIN 177
EDO39695      75 HTAKRALLE 83 
ESO11593     268 ITACRAMLQ 276
1_pfamImport  47 EMCAKALLN 55 
XP_018741539 112 AEAVNGLQR 120
XP_001729822 121 ERAVEGLRH 129
GAC74175     147 RSARLALEY 155
EMD41008     138 TNARAAFKH 146
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap