3U2B


Conserved Protein Domain Family
HMG-box_SoxC

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cd22029: HMG-box_SoxC 
Click on image for an interactive view with Cn3D
high mobility group (HMG)-box found in group C SRY-related high-mobility group (HMG) box (Sox) transcription factors
SoxC transcription factors includes three members: SOX4, SOX11 and SOX12. They play key roles, often in redundancy, in multiple developmental pathways, including neurogenesis and skeletogenesis. SOX-4 is a transcriptional activator that promotes neuronal differentiation both in the adult and embryonic neural progenitors. It binds with high affinity to the T-cell enhancer motif 5'-AACAAAG-3' motif. SOX-4 is abnormally expressed in various cancers. SOX-11 is a neural transcriptional factor involved in precursor survival, neuronal fate determination, migration and morphogenesis. SOX-12, also called SOX-22, is a transcription factor essential for embryonic development and cell fate determination. It binds to the sequence 5'-AACAAT-3'.
Statistics
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PSSM-Id: 438838
Aligned: 19 rows
Threshold Bit Score: 138.725
Created: 8-Apr-2019
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA binding
Conserved site includes 23 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        # ## ## ##   #  #   #      ###  ##  #  ##                 #           # ### 
3U2B_C         2 HIKRPMNAFMVWSQIERRKIMEQSPdmHNAEISKRLGKRWKLLKdsDKIPFIQEAERLRLKHMADYPDYKYRPRKK 77  house mouse
P35716        48 HIKRPMNAFMVWSKIERRKIMEQSPdmHNAEISKRLGKRWKMLKdsEKIPFIREAERLRLKHMADYPDYKYRPRKK 123 human
Q8T3B9        92 HIKRPMNAFMVWSQMERRKICEHQPdmHNAEISKQLGSRWRSLTdeEKAPFVAEAERLRVCHMQEYPDYKYKPRKK 167 Caenorhabditis elegans
ABD24303     109 HIKRPMNAFMVWSQIERRKISEQAPdmHNAEISKRLGRRWKLLSaeERIPFIREAERLKVVHMETYPDYKYRPRKK 184 Belcher's lancelet
P40656       186 HIKRPMNAFMVWSQMERRKICERTPdlHNAEISKELGRRWQLLSkdDKQPYIIEAEKLRKLHMIEYPNYKYRPQKK 261 fruit fly
O15370        39 HIKRPMNAFMVWSQHERRKIMDQWPdmHNAEISKRLGRRWQLLQdsEKIPFVREAERLRLKHMADYPDYKYRPRKK 114 human
XP_002114303  40 HIKRPMNAFMVWSQIERKKMSVHHPdmHNAEISKRLGKRWKLLNddQKKPFVEESERLRVQHMQTYPDYKYRPRKK 115 Trichoplax adhaerens
AFK74892      51 HVKRPMNAFMVWSQIERKKMADIYPdmHNAEISRRLGKRWKLLSdaDRRPFVIRSEKLREEHMRRYPDYKYRPKKK 126 Hydra vulgaris
NP_001266245  66 HIKRPMNAFMVWAQLERRKMTTEFPdmHNAEISRRLGKLWRLLSdrEKQPYIEESERLRIQHMKQYPDYKYRPRKK 141 Amphimedon queensla...
Q8AXQ4        30 HIKRPMNAFMVWSQIERRKLMSLCPnmHNADISRSLGQRWKLLQdtDKIPYVREAERLRLKHMADYPNYKYRPRRR 105 African clawed frog

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