Conserved Protein Domain Family
Shadoo

?
pfam14999: Shadoo 
Shadow of prion protein, neuroprotective
This protein family is a Prion-like protein and its function is neuroprotective and similar to PrP(C)-like. Shadoo is mainly expressed in the brain, and highly expressed in the hippocampus, the area of the brain which co-ordinates memory as well as spatial memory and navigation. This protein may also alter the biological actions of normal and abnormal Prion Protein (PrP) which lead to lethal neurodegenerative diseases. This family of proteins is found in eukaryotes. Proteins in this family are approximately 150 amino acids in length, of which the first 90 are alanine rich.
Statistics
?
PSSM-Id: 373461
Aligned: 5 rows
Threshold Bit Score: 104.25
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
XP_005320848  19 CDSGAAKGGRGGARGSARGGLRGGARGASRVRVRPAPRYSGAGSTLRVAAAGAAAGAAAGAAAGAAAglagGPGWRRATG 98 
XP_005566856  19 CDSGAAKGGRGGARGSARGGVRGGARGTSRVRVRPAPRYGAPGSSLRVAAAGAAAGAAAGAAAGLAA----GSGWRRAAG 94 
Q8BWU1        19 CDSCSAKGGRGGARGSARG-VRGGARGASRVRVRPAPRY---GSSLRVAAAGAAAGAAAGVAAGLAT----GSGWRRTSG 90  house mouse
CAJ43804      19 CDSSTAKGGRGGARGSARGGLRSGARGTSRVRVRPAPRYSAAGSSLRVAAAGAAAGAAAGAATGLVA----GAGWRRVTG 94 
A0RZB4        19 CDGSAAKGGRGGARGSARGG-----RGAARVRVRPAPRY--AGSSMRV-AAGAAAGAAAGAAAGLAA----GSSWRRAAG 86  cattle
XP_005320848  99 PKEGGREDEEDWAPGGNGTGRGVYSYWTWTSGAESTHHLCLCLLLGGALGAlgtLGLLQP 158
XP_005566856  95 PGERGLEDNEDGVPGGNGTGPGIYSYRAWTSGAGPTRSPSLCLVLGGALGA---LGLLWP 151
Q8BWU1        91 PGELGLEDDENGAMGGNGTDRGVYSYWAWTSGSGSVHSPRICLLLGGTLGA---LELLRP 147 house mouse
CAJ43804      95 PGEGGLEDDEDGLSDRNGTSRSVYSYWTWTSGTGCLQCMPLCLLIGSTLGA---LELQQP 151
A0RZB4        87 PAELGPEDAEDGAPGSNGTGRGVYSYWAWTSGTGPTGHRHLCPLLGGALGA---LRLLRP 143 cattle
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap