5NBN,4AM6,4FO0


Conserved Protein Domain Family
ASKHA_NBD_Arp8-like

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cd10206: ASKHA_NBD_Arp8-like 
nucleotide-binding domain (NBD) of the actin-related protein 8 (Arp8)-like subfamily
The Arp8-like family includes Arp8, also called actin-like protein 8, from vertebrates and fungi. Human Arp8 is encoded by the ACTR8 gene and is also known as INO80 complex subunit N. It plays an important role in the functional organization of mitotic chromosomes. Arp8 exhibits low basal ATPase activity, and is unable to polymerize. It is probably a core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication, and probably DNA repair. it is required for the recruitment of INO80 (and probably the INO80 complex) to sites of DNA damage. Arp8 strongly prefers nucleosomes and H3-H4 tetramers over H2A-H2B dimers, suggesting it may act as a nucleosome recognition module within the complex. This subfamily also contains Arabidopsis thaliana Arp9.
Statistics
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PSSM-Id: 466812
Aligned: 46 rows
Threshold Bit Score: 298.001
Created: 6-Oct-2006
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
nucleotideactin/Ino80
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:nucleotide binding site [chemical binding site]
Evidence:
  • Structure:4FO0; Homo sapiens Arp8 binds MgATP, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #### #                                                                   
5NBN_F        14 ATIVIHPGSNSIKIGFPkDDHPVVVPNCVAVPKkwldlensehv------------------------------------ 57  Saccharomyces c...
4AM6_A        41 ATIVIHPGSNSIKIGFPkDDHPVVVPNCVAVPKkwldlensehv------------------------------------ 84  baker's yeast
4FO0_A        16 FIIVIHPGSTTLRIGRAtDTLPASIPHVIARRHkqqgqplykdsw----------------------------------- 60  human
VZI02872     116 KTVVIQPGSTILRIGLAsDSKPTVLLSCIARRRkstatcthssgfpgr-------------------------------- 163 Sparganum proli...
NP_985682    174 NTIVIHPGSRSLKIGLStDVFPLSVPSCVAVARrasqrlep--------------------------------------- 214 Ashbya gossypii...
OEJ90629     124 ETIVIDCGSRVIKCGRPdDEEPLYIASMVATLKregsxpeneevdiledlidneeyiqsdxa------------------ 185 Hanseniaspora u...
Q12386       267 ATIVIHPGSNSIKIGFPkDDHPVVVPNCVAVPKkwldlensehv------------------------------------ 310 Saccharomyces c...
XP_004333074  10 EAVVLHPGSHTLKLGMAtDDLPVVMPHLVARRVydgegtav--------------------------------------- 50  Acanthamoeba ca...
EGG15442       4 KVIVIHHGSYSLKIGLAsDAAPKIIPNWIAKRLkippsssssstipipsnqsqqtvditttttddsndnngvkmeikqtt 83  Dictyostelium f...
EAR85718      38 DVLVFQIGSHNIKYGFAsQENPNKIRTLIAYKTknnessft--------------------------------------- 78  Tetrahymena the...
Feature 1                                                                                        
5NBN_F        58 ------------------------------------------------------------------envclqreqsEEFN 71  Saccharomyces c...
4AM6_A        85 ------------------------------------------------------------------envclqreqsEEFN 98  baker's yeast
4FO0_A        61 ----------------------------------------------------------------llreglnkpesnEQRQ 76  human
VZI02872     164 --------------------------------------------------------------kvavnstplenipeDLFA 181 Sparganum proli...
NP_985682    215 ---------------------------------------------------------------------qqrydkdEDFM 225 Ashbya gossypii...
OEJ90629     186 -----------------------------------------------mrtslqermryykkkfnpvegrkevlkynTSQQ 218 Hanseniaspora u...
Q12386       311 ------------------------------------------------------------------envclqreqsEEFN 324 Saccharomyces c...
XP_004333074  51 ---------------------------------------------------------------------qeldqesEERQ 61  Acanthamoeba ca...
EGG15442      84 geneqpskddvemkdndnvdgshqplsqnttivhdennnnnqedstkqqqqevedqsgkqttspaitivktpsqsqEIIQ 163 Dictyostelium f...
EAR85718      79 ---------------------------------------------------------------------hesfrtyDAFD 89  Tetrahymena the...
Feature 1                                                                                        
5NBN_F        72 NIKSEMEKNFRErmryykrkv-----------------------pgnaheqvVSFNENSKpeiisekndp------spie 122 Saccharomyces c...
4AM6_A        99 NIKSEMEKNFRErmryykrkv-----------------------pgnaheqvVSFNENSKpeiisekndp------spie 149 baker's yeast
4FO0_A        77 NGLKMVDQAIWSkkmsngtrrip------------------vspeqarsynkQMRPAILDhcsgnkw------------t 126 human
VZI02872     182 EAEKLQARALPRegf-----------------------------------kfAHIPEDTAvnkkpd-------------- 212 Sparganum proli...
NP_985682    226 EHLQQIQSDFKErmryykrkiipns--------------heqvlsynsraqpEKIPEHNDlhriewi------------- 278 Ashbya gossypii...
OEJ90629     219 NKVEKIKSDIKRpk-------------------------------------wKNHSDICDvxngyd-------------- 247 Hanseniaspora u...
Q12386       325 NIKSEMEKNFRErmryykrkvpgna--------------heqvvsfnenskpEIISEKNDpspiew-------------- 376 Saccharomyces c...
XP_004333074  62 AALEAARRAGLGavmge------------------------------vplkrKSLVEDVErfnahnctetvtwaddfvwt 111 Acanthamoeba ca...
EGG15442     164 YRVASIESIQKYikdnisnlplhpndqkhnnykyiiipeskfiseekipkkrKKKPMVVDngkpqqplf--------ekp 235 Dictyostelium f...
EAR85718      90 KEVNKLEQLLKGqkkigtqtkgpkggqnsv----aaqklkqrveislktlefQNKMEIEEnaend--------------- 150 Tetrahymena the...
Feature 1                                                                                        
5NBN_F       123 wifddsKLYYGSDALrcv---deKFVIRKPFRGGSFNvks----------pyyKSLAELISDVTKLLEHALNse---tlN 186 Saccharomyces c...
4AM6_A       150 wifddsKLYYGSDALrcv---deKFVIRKPFRGGSFNvks----------pyyKSLAELISDVTKLLEHALNse---tlN 213 baker's yeast
4FO0_A       127 ntshhpEYLVGEEALyvn--pldCYNIHWPIRRGQLNihp----------gpgGSLTAVLADIEVIWSHAIQky----lE 190 human
VZI02872     213 dnrtffPFLHGLGQFen-----gDFIVNWPIQAGRFNp--------------tQSPTSVVQDLEDMWSYALEnf----lG 269 Sparganum proli...
NP_985682    279 kdapegTIYYGEGAErcl---peNFVIRYPFSNGAFNvec----------pdySSLQELLNDVTKLITFALSet---klG 342 Ashbya gossypii...
OEJ90629     248 kckcynKVYCGNDAAlld---tkEYNIRSPFKNLLYNvlideyysemsdqqkhSLQQLLSDDLYHLMRYLLKk-----tE 319 Hanseniaspora u...
Q12386       377 -ifddsKLYYGSDALrcv---deKFVIRKPFRGGSFNvks----------pyyKSLAELISDVTKLLEHALNse---tlN 439 Saccharomyces c...
XP_004333074 112 ptdhqpSFLVGADAQkvg--rgrGYRLQRPIVRGRFNiq------------egYTMRMVLDDLHTIWQHALIhelgltpS 177 Acanthamoeba ca...
EGG15442     236 infeqdNFCIGDDAIeiskdtndHWMVYQPMLSPTTFnla-----------tqSSFQALSADLIEMWKYAIQry----lN 300 Dictyostelium f...
EAR85718     151 --itkrTMLFGEEVFmve--qhdNFMIRKPIKHGYLNvge-----------ynGDFHGPINDIQNLIEYILInk----lS 211 Tetrahymena the...
Feature 1                                                                        ####            
5NBN_F       187 VKPTKFnqYKVVLVIPDIFkKSHVETFIRVLLTElQFQAVAIIQESLATCYGAGIsTSTCVVNIGAAETRIACVDEGTVL 266 Saccharomyces c...
4AM6_A       214 VKPTKFnqYKVVLVIPDIFkKSHVETFIRVLLTElQFQAVAIIQESLATCYGAGIsTSTCVVNIGAAETRIACVDEGTVL 293 baker's yeast
4FO0_A       191 IPLKDLkyYRCILLIPDIYnKQHVKELVNMILMKmGFSGIVVHQESVCATYGSGL-SSTCIVDVGDQKTSVCCVEDGVSH 269 human
VZI02872     270 IPTKTFqlFSVILVIEDIFvRREVRQMVGMLLTNlKFARVVVQQASACATYGVGL-PTACVVDIGSQKTSVACVDEGVSL 348 Sparganum proli...
NP_985682    343 ISRSQFpnYKVILIIPDLFeKNYVEQMIRLLLSEmNFQAVALIQESLATCYGAGLsNSTCVIDIGASETKISCVDEGQVI 422 Ashbya gossypii...
OEJ90629     320 KNPKSK--KKVLLIIPDLHhKETVETLVDLMFKQlGVFKIALMTQSQSIAYGTSIsQPTTCVDIGHTTTKITTLFEGLPI 397 Hanseniaspora u...
Q12386       440 VKPTKFnqYKVVLVIPDIFkKSHVETFIRVLLTElQFQAVAIIQESLATCYGAGIsTSTCVVNIGAAETRIACVDEGTVL 519 Saccharomyces c...
XP_004333074 178 AQKRDFsqYVAVLIVADLFdRREVREMLNMLVREmGFAGVMVLQESVCTSFGYGL-ASACVVDVGDQKTTVTCVDEGACL 256 Acanthamoeba ca...
EGG15442     301 INPQDLnnYGCVYIIPDTFdKKEVKEITSLLLCElRFTSVLLYRQSVCSLFGAAT-GTGCVVDIGYKQISIACVDEGYLI 379 Dictyostelium f...
EAR85718     212 LTRKQFpqYKIVLCIPDVFqRQQIKLLANMFLLSlNFNAIYMHQESILACFGYCI-GQACVVDIGAEKINVCCVDEGLII 290 Tetrahymena the...
Feature 1                  ##                                           #  ##                    
5NBN_F       267 ehSAITLDYGGDDITRLFALFLLQSdfplqd------------wkidsKHGWLLAERLKKNFTtfq-------------- 320 Saccharomyces c...
4AM6_A       294 ehSAITLDYGGDDITRLFALFLLQSdfplqd------------wkidsKHGWLLAERLKKNFTtfq-------------- 347 baker's yeast
4FO0_A       270 rnTRLCLAYGGSDVSRCFYWLMQRAgfpyre------------cqltnKMDCLLLQHLKETFChld-------------- 323 human
VZI02872     349 peVRVTLPIGFSDCLFTFLTFLEQCssenpeve--------kllsgldYNKWSSVRTVYDTFTtadkllvedlls----- 415 Sparganum proli...
NP_985682    423 qnSCIRLSYGGDDITRLFVELLLQSnfpypd------------wnlntRQGWILAEQLKKTHItfq-------------- 476 Ashbya gossypii...
OEJ90629     398 knSSINVNFGSEQVANLFANYMKNVinfpiq------------idmnlKMDRWFVQQMCEKYLtfd-------------- 451 Hanseniaspora u...
Q12386       520 ehSAITLDYGGDDITRLFALFLLQSdfplqd------------wkidsKHGWLLAERLKKNFTtfq-------------- 573 Saccharomyces c...
XP_004333074 257 pdSRVALDYGGRDIADWLLWVVKHWgrhhfpy---------rgasvedPLDEMFLHDLKKECChlhkartanertrhtrh 327 Acanthamoeba ca...
EGG15442     380 pqSRVSLGYGGENITKLLEWLLYKNdstpthkpihqypfpidqcnitiPFYLNLIDSIKINNLnlfi------------- 446 Dictyostelium f...
EAR85718     291 pnTLMRKNYGGDDIDVSLMRMLNKRgciafkqkt------nyrvecrnYGDMHQIEKLKEKHAsfe-------------- 350 Tetrahymena the...
Feature 1                                                                                        
5NBN_F       321 --------------dadVAVQLYNFMNRsp---nqPTEKYEFKLfdevmlaplalffpqifklirtsshknsslefqlpe 383 Saccharomyces c...
4AM6_A       348 --------------dadVAVQLYNFMNRsp---nqPTEKYEFKLfdevmlaplalffpqifklirtsshknsslefqlpe 410 baker's yeast
4FO0_A       324 --------------qdiSGLQDHEFQIRhp---dsPALLYQFRLgdeklqapmalfypatfgivgqkmttlqhrsqgdpe 386 human
VZI02872     416 -----gkntgnkgrttpAVLDVPIASVRed----aPLSALPIPAvavvashllpffpgmfssasdtssikpiyqvpsmda 486 Sparganum proli...
NP_985682    477 --------------dadVAVQLFNFFKReps--vpGAEKFEFKLfnevmispmayfypqilsflkpatsynkymaqqlpe 540 Ashbya gossypii...
OEJ90629     452 --------------egnLAVQLYTNCIKyddqdalIAYKTDFKIfeevflagmgmfyadifkvldinryskkqvnlllnk 517 Hanseniaspora u...
Q12386       574 --------------dadVAVQLYNFMNRsp---nqPTEKYEFKLfdevmlaplalffpqifklirtsshknsslefqlpe 636 Saccharomyces c...
XP_004333074 328 tdppaahmwtrvdpqdeQTTQIFSFYERqp---gqRTLLHHINInqelifaplglfhpdvlalptprgtmqaliaplada 404 Acanthamoeba ca...
EGG15442     447 --------------ndeKKIRQSICKVKet----iKSKKYKVYQfngdivfkvpalslfypksfkedeinneqtstnnnn 508 Dictyostelium f...
EAR85718     351 ---------------qaEDLSSRVFEMHcvr--ngIEELFTVQHnealyiaptiifhadvlnaltkntsnsykdidfefy 413 Tetrahymena the...
Feature 1                                                                                        
5NBN_F       384 srdlftnelndwns-------------------------------------------------------------lsqfe 402 Saccharomyces c...
4AM6_A       411 srdlftnelndwns-------------------------------------------------------------lsqfe 429 baker's yeast
4FO0_A       387 dphdehyllatqskqeqsakatadrksa----------------------------------skpigfegdlrgqssdlp 432 human
VZI02872     487 pepddpfd------------------------------------------------------------------------ 494 Sparganum proli...
NP_985682    541 srdpytykpdnpksiaqe-----------------------------------------------------saftgkvyt 567 Ashbya gossypii...
OEJ90629     518 drvdehglnsixnytaskaskrfsdqqtdedvlklamelklddlkekveeddeededededeeddddeddeddeddedag 597 Hanseniaspora u...
Q12386       637 srdlftnelndwns-------------------------------------------------------------lsqfe 655 Saccharomyces c...
XP_004333074 405 svnddilpdlsastassksq-------------------------------------------------prsghakgtlw 435 Acanthamoeba ca...
EGG15442     509 gn------------------------------------------------------------------------------ 510 Dictyostelium f...
EAR85718     414 dyrskrfeynedpednleevtagivwgqqknl-------------------------inpylagahiieqrkkdelkkel 468 Tetrahymena the...
Feature 1                                                                                        
5NBN_F       403 skegnlycdlnddlkilnrildahniidqlqdkpenygntlkenfAPLEKAIVQSIAnas-------------------- 462 Saccharomyces c...
4AM6_A       430 skegnlycdlnddlkilnrildahniidqlqdkpenygntlkenfAPLEKAIVQSIAnas-------------------- 489 baker's yeast
4FO0_A       433 erlhsqevdlgsaqgdglmagndseealtalmsrktaislfegkaLGLDKAILHSIDc---------------------- 490 human
VZI02872     495 -diylamtvkekrrkvqgqldqvsakgdenvvdpklskiqkptsfRSLADAILWSIGqasnlaaaaaassvpqeavvata 573 Sparganum proli...
NP_985682    568 dinkdldiirklvsvndevealtsgpsertsgdtiktntrrasnyTPLDKAIIESVTtasv------------------- 628 Ashbya gossypii...
OEJ90629     598 kkhtkgndekeqkadkeqdxpeivtkedvedainndieeevelnyCPLDKAIVQSILtsv-------------------- 657 Hanseniaspora u...
Q12386       656 skegnlycdlnddlkilnrildahniidqlqdkpenygntlkenfAPLEKAIVQSIAnas-------------------- 715 Saccharomyces c...
XP_004333074 436 lcfgltsssgyqpgtdtgttgpasegapakaaaadraletdtpalLALHDAVIASLAsi--------------------- 494 Acanthamoeba ca...
EGG15442     511 -------nknigsskqsqsrknrladyeelfeetmsektsstdplYPLDKAIYKSINmv--------------------- 562 Dictyostelium f...
EAR85718     469 laqnpnlnqqqnqnpeqieeqkkqelqqqqtykltedellnpytmVNLEDIISQSIAn---------------------- 526 Tetrahymena the...
Feature 1                                                  ###                                   
5NBN_F       463 ------------------------itADVTRMNSFYsNILIVGGSsKIPALDFILTDRINIWrpsllssasfpqfykklt 518 Saccharomyces c...
4AM6_A       490 ------------------------itADVTRMNSFYsNILIVGGSsKIPALDFILTDRINIWrpsllssasfpqfykklt 545 baker's yeast
4FO0_A       491 -------------------------cSSDDTKKKMYsSILVVGGGlMFHKAQEFLQHRILNKmppsf------------- 532 human
VZI02872     574 ncataatgnapaggrpspqvseeragAGAELWRRMLgCILLVGGG-VTGLGGQLIEQRLTRElcaaaaadqr-------- 644 Sparganum proli...
NP_985682    629 -----------------------llgDNMSKLVNFYsNLLVIGGSsKVPGLDLILTDRINIWrprllsvstlpvvykkvs 685 Ashbya gossypii...
OEJ90629     658 -----------------------vtsDLPIKIKELYnNIILVGGGsNIPNLDMLLIDRLTMNrpgifstnylsgilsdie 714 Hanseniaspora u...
Q12386       716 ------------------------itADVTRMNSFYsNILIVGGSsKIPALDFILTDRINIWrpsllssasfpqfykklt 771 Saccharomyces c...
XP_004333074 495 ------------------------psAKREQKKRLCsAVILAGGSsQFPGLREVLESKYATLhlllqaaaaaaaadnllg 550 Acanthamoeba ca...
EGG15442     563 -------------------------gEKMDTRKKYLqNMQLVGGGsHIPGIQEIIRNRINIIhqqyqqskfeqqqqqqq- 616 Dictyostelium f...
EAR85718     527 -------------------------vKDPELRKKLAnHILIIGGTsQTSKMVEELEDRLIEKisqyd------------- 568 Tetrahymena the...
Feature 1                                                                                        
5NBN_F       519 keikdleghyvnapdkte-----------------denkqilqaqikekiveeleeqhqniehqngnehifPVSIIPPPR 581 Saccharomyces c...
4AM6_A       546 keikdleghyvnapdkte-----------------denkqilqaqikekiveeleeqhqniehqngnehifPVSIIPPPR 608 baker's yeast
4FO0_A       533 ------------------------------------------------------------------rriieNVDVITRPK 546 human
VZI02872     645 --------------------------------------------------------------wlqagapvaSVEVLLRPE 662 Sparganum proli...
NP_985682    686 emvkqveneikknnpe---------------------seeeiaqsrkkliksikielenywesvdpyehvyPIAVLPPPR 744 Ashbya gossypii...
OEJ90629     715 iqkenqdddrsvivqkalenyyklqeqsnnlrdqllqpnkkqktsnadsskakkiatdeesasaivqeaytTVRIIPLLE 794 Hanseniaspora u...
Q12386       772 keikdleghyvnapdkte-----------------denkqilqaqikekiveeleeqhqniehqngnehifPVSIIPPPR 834 Saccharomyces c...
XP_004333074 551 iydpnhrineavps--------------------------swaqednvgeggraevsparrgssstaacgpAVEVLASRR 604 Acanthamoeba ca...
EGG15442     617 -------------------------------------------------------nnqqqtnnqqpqpiieELIVLFPTT 641 Dictyostelium f...
EAR85718     569 -------------------------------------------------------------------ynieRVEVIDSLS 581 Tetrahymena the...
Feature 1                                                     
5NBN_F       582 DMn---pALIIWKGASVLAQIKlveELFITNSDWDVHGSRILQYK 623 Saccharomyces cerevisiae S288C
4AM6_A       609 DMn---pALIIWKGASVLAQIKlveELFITNSDWDVHGSRILQYK 650 baker's yeast
4FO0_A       547 DMd---pRLIAWKGGAVLACLDttqELWIYQREWQRFGVRMLRER 588 human
VZI02872     663 GV-----ANLAWEGARLMINADsisDLWFSAAEWQRYGSRLGELP 702 Sparganum proliferum
NP_985682    745 EMd---pSMLTWKGGSVFGRIKlceELYITAMDWEMLGSRILKYK 786 Ashbya gossypii ATCC 10895
OEJ90629     795 NVs---sSNVCFRGGSIYASIKlidEMYVSKNDWDLVGPKVFRYK 836 Hanseniaspora uvarum
Q12386       835 DMn---pALIIWKGASVLAQIKlveELFITNSDWDVHGSRILQYK 876 Saccharomyces cerevisiae S288c
XP_004333074 605 KDmeldsRFLSWKGGAIAACLEatrELWITAAQWCTHGERHLRER 649 Acanthamoeba castellanii str. Neff
EGG15442     642 QKhdidpTIMGWKGGAIIGCLEssrEIWITRDEWKGGQNSSYILK 686 Dictyostelium fasciculatum
EAR85718     582 KKem-ypSYLSWIGATVIPRLDsikDLWINQNRWLGLFDDIDDSS 625 Tetrahymena thermophila SB210

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