7KSF


Conserved Protein Domain Family
RT_RNaseH_2

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pfam17919: RT_RNaseH_2 
RNase H-like domain found in reverse transcriptase
Statistics
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PSSM-Id: 465567
Aligned: 175 rows
Threshold Bit Score: 66.3689
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
7KSF_A         424 WSEENTKQLNMVIEALNTASNLEERLPEQRLVIKVNTSPSA-GYVRYYN--ETG-KKPIMYLNYVFSKAELKFSMLEKLL 499 
KYP34382       462 WNEEHQKAFDEIKVYLAHPPVLAPLSKGKQLKLYISASDSTiAGMLAQDd-dNGiERVIYYLSRMLVGAETRYTPLEKLC 540 
Q87040         428 WTEDNTKQLNKVIEALNTASNLEERLPDQRLVIKVNTSPSA-GYVRYYNesGK---KPIMYLNYVFSKAELKFSMLEKLL 503  Pan troglody...
13_pfamImport    1 WTPVHEEALRQLINEIHTYQALGPIHPDAPFHVYLTIGATGmSYALWQEseTAP-RRPIQFGSKSWQGSQANYTPYEKVL 79  
KYP59710       344 WTEECEKAFGELKQALTSPPILTKPQTDLPLLVYLSASESAvSTVLVQErgNSQ--LPIYFVSRVLQGAEVHYQKIEKLA 421 
EFN81895      1125 WDQRMERAFSDIKESVRNAPSLYLINPDRKYGIETDASTVGiGARLFQYddAGR-EYTIAYASRSLKGAERRYTVTEVEG 1203
CAK44870       166 WTWRQDLAFENVKRLEQRMLDTAYFDPTRKCTLRTDASSFAiGAQLMQGg------lTCAIISRRLTPPERNYTVTEREL 239 
KFX87757       289 WTSTQKLAFAQLKQQVVNHLQLYKFDPLTDLHIMTDASFFAiGGWLFQTieG-K-LRSIALVSRGLSPAERNYTTTEREL 366 
EFA74674      1207 WSDDCQLAFDTIKSAIKEKPSLFPPNYDLPFIFECDASDVGtGYRLFQLvdGKE--NVICYGSKKLKDSETRYSTLEKEL 1284
XP_001523452   918 WDPTTKRFFHQIITVLTNQPILQPLNFKDLITVHTDASTDSwGGVLQNTnaAGE-SKLVLCYSGKFHGSEKNYTIYEKEL 996 
7KSF_A         500 TTMHKALIKAMDLAMG--QEILV 520 
KYP34382       541 LSLYVACTKLKYYIRT--RDVVI 561 
Q87040         504 TTMHKALIKAMDLAMG--QEILV 524  Pan troglodytes foamy virus
13_pfamImport   80 LAAYTALRETEELTQN--RAITI 100 
KYP59710       422 LTIVIIAWKLRHYFHS--YEMVI 442 
EFN81895      1204 LALVWCLKKWRVLLMG--RPVRV 1224
CAK44870       240 LAVIYALEKWFPLLEGs-PGIRV 261 
KFX87757       367 LAIVFTVKKWRHYLEStrANIII 389 
EFA74674      1285 LAIVTALKANYYHIFG--RDIEI 1305
XP_001523452   997 FSIYKTFDAIHPLLFGftGVIHL 1019
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