Conserved Protein Domain Family
SdrH_fam_CTERM

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NF039170: SdrH_fam_CTERM 
SdrH family protein C-terminal domain
The founding member of this family of staphylococcal proteins, SdrH from Staphylococcus epidermidis, is one of three MSCRAMM family proteins, but is atypical in lacking a recognizable LPXTG-like C-terminal recognition sequence for cell wall anchoring. This HMM represents the entire region C-terminal to the repetitive, low-complexity region that is a feature of all members of this family. That repetitive region consists mostly of Ser-Asp dipeptides in S. epidermidis but has radically different compositions in other species.
Statistics
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PSSM-Id: 468504
Aligned: 20 rows
Threshold Bit Score: -1
Created: 24-Apr-2023
Updated: 3-May-2023
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_015900788 443 ERFGHLIQGSFKYNPFVVNQISRMSED-GNTSEQDINKVLERNNFASNRELNNLQENTGYFKYQYFNPLDAQQYYDNLDV 521 Staphylococcus ...
WP_023373233 386 RRFNSLAEGSYKYNPFVIHQIHQLDNSnGAVSDKDIYNIFRKETFSGNQYLNSLQQSSNYFRFQYFNPLDSKKYYKNLDD 465 Staphylococcus ...
WP_047796484 449 DRFRSLASGAYKYNPFLINQVRNLDTEnGEITDSDIYSLFKKQNFSGNEYLNSLQKGSNYFRFQYFNPLNASKYYENLDE 528 Staphylococcus ...
WP_062248909 338 KRFKSLAIGSFKYNPFIIEQVNKLGESgNQVSDQDLYALFRKQNFSGNSYLNSLQRGSNYFRFEYFNPTNSSKYYKNLDE 417 Staphylococcus
WP_053030417 454 NRLNDLANGSYKYNPYIINQVNRLGNNnEYISNQDFYRLFRKQSFN-NQYLDYLQKGSNYFRFEYFNPLNSKKYYKNLDE 532 Staphylococcus ...
WP_103328226 461 HRFNTLATGSYKYNPFIINRVNRLGENeDNVTDQDFYRLFQKQTFN-NEYLNSLQRKSNYFRFEYFNPLNAREYYKNLDE 539 Staphylococcus ...
WP_049431166 342 NRFNQYAKGAYKYNPYIINKINHLDDNgEKITNKDFNRLIKKQKFD-NQNLNILQEDSQYFRFQYFNPLNAKEYYKNLDE 420 Staphylococcus ...
WP_105967003 317 DRYGHLITGSFRYNPFIVHQVGMISDDtQSTED-DVHAVLKPQNFSNNSNLNNLQQSTGYFKYQYFSPMRAQQYYANLDL 395 Staphylococcus ...
WP_015729414 284 DEYAGLLNNNYKYNPLFKEEVARLSQF-GSQDQHDIASLSRKEQFSQNAFLDDLQQSTDYFRYQYFNPLSTEQYYHRLDK 362 Staphylococcus ...
WP_169710761 226 QQYINRVNNSYKYNPLLLEEILRLSRT-GVIREGDVQNLGRKENFVNNQYLDELQQSTDYFRFQYFNPITSEQYYDRLDK 304 Staphylococcus ...
WP_015900788 522 QVLGLITGDIGSMPDLKQTKKSADFEVGSTNHAKDYTEKIDKREKDSKtteteSDDSSkSHPRIIGTLLAAFGAAFIWFI 601 Staphylococcus ...
WP_023373233 466 QVLALITGDIGSMPDLKKPEDKESSDKSSFKNHSDDKISTSN-QQKES-----YQKEQ-KTNRLLMTLGTSIVAIFIGVI 538 Staphylococcus ...
WP_047796484 529 QVLALITGEIGSMPDLKKPNDKDKGSRSAFKNHSADEITTNDNEQSDD-----YNKNK-KLDRVLITLGSAIVAIFAGVV 602 Staphylococcus ...
WP_062248909 418 QVLALITGEIGSMPDLKKPVDK--KGEDNHTQRSEDKIISAEGEDHKQg------MTDvKFNRLNITLIGSMCVIFVAVM 489 Staphylococcus
WP_053030417 533 QVLALITGEIGSMPDLKKPSDRDKEEEADIQSHDEDKIIDSKEESKEA-----ENNd--KYKNINIALITSIIVIFVGVT 605 Staphylococcus ...
WP_103328226 540 QVLGLITGEIGSMPDLKKPSDKHSSKNEDEADIHSHKKIIESNDDEKS-----KTKGKdNIGKVNITLISSIIIIFLGII 614 Staphylococcus ...
WP_049431166 421 QVLSLITSDIGSMPDLKKPKTIHKDEVEEEQHKKVITSSHKKTESKSY------------IKTLNMILIPTLILISSTVM 488 Staphylococcus ...
WP_105967003 396 QILGLVTSDLGSMPDLKEVKRDKHAEAKQTTKPSEDKKQNADKAKKKQe---eKTTDKqKYPRLLNTLLIVFGVAFIWFI 472 Staphylococcus ...
WP_015729414 363 QVLALVTGEFGSMPDFKKSGDKSLVNKHQQDKVKKIEQQGENINTHHMkn--tkEDTGkSLSYKPMIYIGIVMVGFVGLI 440 Staphylococcus ...
WP_169710761 305 QVLALITGRFGAMPDLKASSQTDVESKNQQDKVKKIEQYGENIDHQNMnh--dvEKKQtPMSYKPMIYIGLVMVGFVGML 382 Staphylococcus ...
WP_015900788 602 ILMIMKKR 609 Staphylococcus carnosus
WP_023373233 539 IAFLLKRR 546 Staphylococcus pasteuri
WP_047796484 603 GMFIYNRR 610 Staphylococcus capitis
WP_062248909 490 VYWFINRQ 497 Staphylococcus
WP_053030417 606 GRFIYRKI 613 Staphylococcus borealis
WP_103328226 615 GRYLFKLL 622 Staphylococcus croceilyticus
WP_049431166 489 IIYVYQNL 496 Staphylococcus hominis
WP_105967003 473 VLMIMKRK 480 Staphylococcus simulans
WP_015729414 441 SMILWKRL 448 Staphylococcus pseudintermedius
WP_169710761 383 SMIFWKRR 390 Staphylococcus lutrae
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