2QKM,1Q67,2QKL


Conserved Protein Domain Family
Dcp1

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cd09804: Dcp1 
Click on image for an interactive view with Cn3D
mRNA decapping enzyme 1 (Dcp1)
mRNA decapping enzyme 1 (Dcp1), together with Dcp2, is part of the decapping complex which catalyzes the removal of the 5' cap structure of mRNA. This decapping reaction is an essential step in mRNA degradation, by exposing the 5' end for exonucleolytic digestion. Dcp1 binds to the N-terminal helical domain of catalytic subunit Dcp2 and enhances its function by promoting Dsp2's closed conformation which is catalytically more active.
Statistics
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PSSM-Id: 197362
Aligned: 54 rows
Threshold Bit Score: 120.711
Created: 18-Nov-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
heterodimer
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Structure:2QKL, Schizosaccharomyces pombe Dcp1-Dcp2 complex, contacts 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         ##   # ##  ##         # #                     #                                
2QKM_A         6 ILRNAVNLQVLKFHYPEIESIIDIASHVAVYQFDvgsqKWLKTSIEGTFFLVKDQr------------------------ 61  fission yeast
1Q67_A        17 FYRKALNFNVIGRYDPKIKQLLFHTPHASLYKWDfkkdEWNKLEYQGVLAIYLRDvsqntnllpvspqevdifdsqngsn 96  baker's yeast
2QKL_A         6 ILRNAVNLQVLKFHYPEIESIIDIASHVAVYQFDvgsqKWLKTSIEGTFFLVKDQr------------------------ 61  fission yeast
BAJ94794       6 EARTSFNLKVLRRHDASIVEIVETASFVVLYNYNg--gEWTKTGVEGPLFLFRRRlp----------------------- 60  domesticated ba...
XP_456440     31 LYRNALNFNVISRYDEFIKQLLYHTSHCVIYKFNdetqEWVKTDYQGTLALYLRDfkvpqnqgfp--------------- 95  Debaryomyces ha...
EFP82264       1 MDPRTINFNVLRRHDPQISSILDSTSYAVIYRYFh--gAWSKTGFEGTLFIFQRDth----------------------- 55  Puccinia gramin...
XP_002489499  18 IYRKAMTFNILSRYDPQVNQLLYLSSHCVVYEFId--nDWSKLDYQGTICLYSRKeyekqsniqqhs------------- 82  Pichia pastoris...
Q74Z05        14 LYRKTLNFNVIGRYDPKIKQLLFHTPHATVYKWEagenKWNKLEYQGVLAIYLRDvreqaelpvphqeasa--------- 84  Ashbya gossypii...
EFW98051      22 IYKQALTFNVIAKYDPLIDQLVHLTSYCVVYRFDpdqnDWVKLDFQGPLAIYSRKsevsgptpap--------------- 86  Pichia angusta ...
XP_505466     24 YSRQTLNHIALTNIDQKTGQVFFNSAICSVYKFSmtsnSWEKMPVLGTLFIYSRRvtped-------------------- 83  Yarrowia lipoly...
Feature 1                                                        ###  # #                        
2QKM_A        62 -----------------------------------------aRVGYVILNRnsPENLYLFINHp---------------- 84  fission yeast
1Q67_A        97 niqvnngsdnsnrnssgngnsyksndsltyncgktlsgkdiyNYGLIILNRinPDNFSMGIVPnsvvnkrkvfnaeedtl 176 baker's yeast
2QKL_A        62 -----------------------------------------aRVGYVILNRnsPENLYLFINHp---------------- 84  fission yeast
BAJ94794      61 -----------------------------------------pYNGFFLMNRngVENFSADVTQe---------------- 83  domesticated ba...
XP_456440     96 --------------------------------ptyqdlqnlfCYGLLLLNRnnPECFSLGLLPnkiikhffpq---glnn 140 Debaryomyces ha...
EFP82264      56 -----------------------------------------pFYGVFVLNRqgLDNLCEGLLSg---------------- 78  Puccinia gramin...
XP_002489499  83 ------------------------------ldtktiisnnlfQFGIIIFNRnkPENFSIGIIPnkfian----------- 121 Pichia pastoris...
Q74Z05        85 --------------------------gaegrcgevlsgrdiyNYALIVLNRinPENFSIAIAPnsvvnkrrlfspeenvq 138 Ashbya gossypii...
EFW98051      87 ---------------------------------qivqndqlyTSGLIVLNRikPENFSIGLISnkqltd----------- 122 Pichia angusta ...
XP_505466     84 -------------------------------------etdpyPYALIILNRtsPENFSLGLIPqnvsyytnagv--qkdt 124 Yarrowia lipoly...
Feature 1                                                             
2QKM_A        85 -----sNVHLVDrYLIHRTe-------nQHVVGLWMFDpNDMSRIFNIVKESL 125 fission yeast
1Q67_A       177 nplecmGVEVKDeLVIIKNl-------kHEVYGIWIHTvSDRQNIYELIKYLL 222 baker's yeast
2QKL_A        85 -----sNVHLVDrYLIHRTe-------nQHVVGLWMFDpNDMSRIFNIVKESL 125 fission yeast
BAJ94794      84 -----dDLEITPeFIIYRPetn----gdNEVYGIWVFEpGQRMAVGDKLLKLQ 127 domesticated barley
XP_456440    141 mnilemDVELNDnLIIVKDl-------vGDIYGLWVFNeDDRMKLYKLLEFCL 186 Debaryomyces hansenii CBS767
EFP82264      79 -----wDVDLDEgLIIWRSagatgdaddDVIYGIWVYEeKDRTRIATTMQELI 126 Puccinia graminis f. sp. tritici CRL 75-36...
XP_002489499 122 qsdkklIVEQQNeLIIVKDl-------lGTVYGLWVFDsKDREMIYKMLDYCI 167 Pichia pastoris GS115
Q74Z05       139 qplepmDVEVKDeLVIIKNl-------rKEVYGIWIHTpTDRQNIYDLLKYLL 184 Ashbya gossypii ATCC 10895
EFW98051     123 -pedgiIVENTEkLIIVRDl-------sQQTYGLWIFDaADRDYICEILKYCI 167 Pichia angusta DL-1
XP_505466    125 ndipemNSSLEDsFIMVSAs-------dGQMYGLWLFDeKDRDPALSLINWCL 170 Yarrowia lipolytica CLIB122

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