4DN7


Conserved Protein Domain Family
SUFBD

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pfam01458: SUFBD 
SUF system FeS cluster assembly, SufBD
Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S]. FeS cluster assembly is a complex process involving the mobilization of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. SufA is homologous to IscA, acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. This entry represents SufB and SufD proteins, which are homologous, and form part of the SufBCD complex in the SUF system. SufB accepts sulfur transferred from SufE, whereas SufD may play a role in iron acquisition.
Statistics
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PSSM-Id: 460219
Aligned: 806 rows
Threshold Bit Score: 103.296
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4DN7_A          178 AQTVHNIIIVEEGATLDIItgcttkkgvEEG--------LHLGISEXYIKKGGTLNFTXIHNWAEQIGVRPRTVVsvEEG 249
jgi:Tmz1t_1897  194 DQHLRNLVVTEPGAQATIV---------EHYpagaagstLTTAVTRVLAAQDSHVTHLKLQQEAPEAIHLATIEAeqARG 264
WP_013742321    175 ASFPRNLIQAEAGSRAVIV---------EHYlgqnsgasLTNTVTRAQLAADAHVTHLKLQHEDEQAVHLGAIDVvqATG 245 Pusillimonas...
CDM24274        153 AHFLRHLVQAEAGAQATVV---------EHYvgapgaanFRHAATRLRLDQDARITHLKLQQESEQAWHLGEIDAtqGRG 223
jgi:Mmol_1127   182 AIYPRIIVMAGAGTRATII---------EHYmgtldahnFTNATTQLNLDAGASIEHCKLTQEGPAAAHIAGIHAqlAEG 252
Q7NKV4          183 AQFVRNRITAGPGSRATII---------ETYaslgagvhFTCPVGAVDVGADADLDHYRLGQENAAAFHLATSRVrlGRD 253 Gloeobacter ...
ASGPB:GKIL_1932 177 ASYPRHLIALGANSEATVI---------ETYtslgagvhFSCPLSEVGLAANARLNHHRFVRQNPAAYHLATSHLhlGRD 247
jgi:Hhal_0537   184 AVYPRVIVHGEEASHLRVV---------EYHsgdpeaayLSCPVTELVADAGAQVDLTRISEEGDAGCQLGAVSGtaARD 254
Q3J8A5          187 VTHSRNLIVLEPESELTVI---------EHYaglndavyFTNTVTEIAAGKGANVEHIKLQEESAKSFHIATIQVqqEQD 257 Nitrosococcu...
jgi:Q7C_275     177 AVHLRHVVVMEAESEATLI---------ELYaspddttgLTNSITEIDLADRAKLFHYKLQRESKQQFHIATMAAkqAQS 247
4DN7_A          250 GTYVSNYICL--KPVRSvqtYPTVRLEGEGAVTRLNTIAIAHPGSELDLGSKAIFNAPGTRAELISRTITIG-GRLIARG 326
jgi:Tmz1t_1897  265 AVFASHSLSFgaRLARN---DIRTRLAGEGAEVLLNGLYHADGRRHVDHHTRIDHARPQGTSREFYRGLIDGsARGVFTG 341
WP_013742321    246 SVYNSHSMSFgaRLARH---DIATDFSGDHCEALLNGLYYVNGRRHVDHHTLIGHSKPHGVSHEYYRGVLADtARGVFSG 322 Pusillimonas...
CDM24274        224 SYFASHSVSLgaRLARH---DIATHFADERCETLLNGLYYVDQRRHVDHHTLIGHEKPRCVSHESYRGIMADaSHGVFSG 300
jgi:Mmol_1127   253 STFTSKSFVFggRLVRN---DITASLNEPNCTCNLDGLYLLNDKQHVDHHTRIDHRAASCTSREYYRGVLDGdSRGVFNG 329
Q7NKV4          254 ARFKSLAFVAggGLVRH---DLFAELAGPGSEATLHGLYLAGGTRHVDHHLWVRHSAPHAASRQIYKGILAGrARAVFNG 330 Gloeobacter ...
ASGPB:GKIL_1932 248 SRINALAACLggSLTRH---DLHVDLAAPGSEANLQGLYLAADTQQVDNHLWVRHSAPHTRSRQSYRGILAGrAQAVFNG 324
jgi:Hhal_0537   255 ARVGAHSFVWggDKVRV---DIEATVQGDNGEGDLTGVHLSDGQRFVDHHTWVHHDAEHTRSRQVFKGVLDGrSESVFDG 331
Q3J8A5          258 AQFLSRNLALggRLARN---DINSVLAGEGAGCILEGLYVLDGVRHVDNHTRVDHQQPHTTSQEFYKGILDGkSRAVFNG 334 Nitrosococcu...
jgi:Q7C_275     248 SEWHNHNISLggQLARN---DVHSQLLGEQAHVTMNGLYLVDGRQHVDNHTRIDHTIPNTTSDELYKGVMDDkSHAVFNG 324
4DN7_A          327 EXI--GNAKGAKGHLECKGLVLTDKGSQLAIPILEANVDDIELTHEAAVGKIAKDQVEYLXARGLTEDEAVGXIIRGF 402
jgi:Tmz1t_1897  342 RILvaQDAQRTDAMQRCDNLLLSRLAEADARPELEIYADDVKCAHGATVGQLDEDALFYLRSRGVDAVHARQLLTYAF 419
WP_013742321    323 RILvaPGADKTDAVQRSDSLLLSRMAKADARPELEIYADDVKCAHGATVGQIDEDSLFYLRTRGLDESSARSVLTYAF 400 Pusillimonas s...
CDM24274        301 RILvaPGADGTDAIQRNDSLLLSRLAKSDARPELEIYADDVKCAHGATVGRIDEDSLFYLRSRGLDEAHARDILIYAF 378
jgi:Mmol_1127   330 KVVvhAGANHTDANQTNHNLLLSRQAEINTKPQLEIFADDVKCTHGATVGQLSDESLFYLRTRGLDEEVARSMLIYGF 407
Q7NKV4          331 NVFvaSEAAKTDAKQTNRNLLLSDAALVHSNPQLEIYAGDVRCTHGSTVGQLDEEALFYLRSRGLDEAQAKNLLTRAF 408 Gloeobacter vi...
ASGPB:GKIL_1932 325 NIHveAAAAKTDARQSNRNLLLSDTALVHTNPQLEIYAGDVRCTHGSTVGQLDEEALFYLRSRGLDAASARNLLTYAF 402
jgi:Hhal_0537   332 LIKvhPGAQKTDAEQENRNLLLSPRAFAHSNPRLEIFADDVRCTHGSTVGELDEQALFYMRARGIDPLVAKSLLTYAF 409
Q3J8A5          335 KVIvhPHAQKADARQANRNLLLSEGAEVDTKPELEIYADDVKCAHGATVGQLDKDQIFYLRSRGMEEDAARQLLTYAF 412 Nitrosococcus ...
jgi:Q7C_275     325 KVHvhRDAQKTDANQANKNLLLSRGAEIDSKPEMEIYADDVKCGHGSAIGQINEDQLFFLRARGLSETSARSLLTFAF 402
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