Conserved Protein Domain Family
RRM_SLIRP

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cd12242: RRM_SLIRP 
RNA recognition motif (RRM) found in SRA stem-loop-interacting RNA-binding protein (SLIRP) and similar proteins
This subfamily corresponds to the RRM of SLIRP, a widely expressed small steroid receptor RNA activator (SRA) binding protein, which binds to STR7, a functional substructure of SRA. SLIRP is localized predominantly to the mitochondria and plays a key role in modulating several nuclear receptor (NR) pathways. It functions as a co-repressor to repress SRA-mediated nuclear receptor coactivation. It modulates SHARP- and SKIP-mediated co-regulation of NR activity. SLIRP contains an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), which is required for SLIRP's corepression activities.
Statistics
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PSSM-Id: 409688
Aligned: 7 rows
Threshold Bit Score: 111.676
Created: 28-Nov-2011
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9GZT3        20 VAFVRRIPWTAASSQLKEHFAQFGhVRRCILPFDKETGfHRGLGWVQFSseEGLRNALQQe---nHIIDGVKVQVH 92  human
XP_001235249  16 DIFVAEVPWTVSSKELKEYFSQFGsVQRCQLPFDKDTGfHKRYCWIKFSspEEVQNVLQKd---sHILEGAKLSLR 88  chicken
ACQ58635      10 EVFVSKIPWTTAGKEMREYFGQFGpVKRCLLPFDKDTGfHRGFCWVGFTteEGLNNALQKd---pHMVEGAKLQVQ 82  Anoplopoma fimbria
XP_001901863 466 KLFVKRISWVTGASQLKDYFSQFGkVRNIMLPFDLETGlHKGFAFISFEndDFYENIKKFeg--kHVIDDEEVICL 539 agent of lymphatic ...
EGR30834     340 TLFVSNLPNNTSQTKLKKYFSQYAkVKQVKIPFDKKTGrQKNFAYIIFEnqDELRSAHLKttthkIKFEGNDIHVK 415 Ichthyophthirius mu...
NP_001027083  16 RIFVGNLPWTVGHQELRGYFREFGrVVSANVIFDKRTGcSKGYGFVSFNslTALEKIENEq---kHILEGNYLNIQ 88  fruit fly
EEC06687       8 KVFVGNLSWTVGRRELRDYFSQFGyVTSSNVVFNKENGmSKGFGFVVFGnrDGFMNATKPq---qHIFEGNTVSLA 80  black-legged tick
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