4I6M,3WEE,5TGC,6TDA


Conserved Protein Domain Family
ASKHA_NBD_ScArp7-like

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cd10212: ASKHA_NBD_ScArp7-like 
nucleotide-binding domain (NBD) of Saccharomyces cerevisiae actin-related protein7 (Arp7) and similar proteins
Saccharomyces cerevisiae Arp7, also called actin-like protein 7, is a component of the chromatin structure remodeling complex (RSC), which is involved in transcription regulation and nucleosome positioning. It is also part of the SWI/SNF complex, an ATP-dependent chromatin remodeling complex, which is required for the positive and negative regulation of gene expression of many genes. Arp7 forms a stable heterodimer with Arp9 protein in both the RSC and SWI/SNF chromatin-remodeling complexes. It has been suggested that this dimer functions as a module with DNA bending proteins, to achieve correct architecture and facilitate complex-complex interactions. Fission yeast SWI/SNF and RSC complexes do not contain Arp7 and Arp8, but instead contain Arp9 and Arp42.
Statistics
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PSSM-Id: 466818
Aligned: 5 rows
Threshold Bit Score: 849.391
Created: 1-Jun-2009
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 23 residues -Click on image for an interactive view with Cn3D
Feature 1:nucleotide binding site [chemical binding site]
Evidence:
  • Structure:5TGC; Saccharomyces cerevisiae Arp7 binds ATP, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # ####                #                                                 
4I6M_A      3 LNRKCVVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEgGEAEFIFgTYNXIDAAAEKrnGDEVYTLVDSqGLPYNWDA 82  Saccharomyces cere...
3WEE_B      3 LNRKXVVIHNGSHRTVAGFSNVELPQXIIPSSYIKRTDEgGEAEFIFgTYNMIDAAAEKrnGDEVYTLVDSqGLPYNWDA 82  Saccharomyces cere...
5TGC_A      4 LNRKCVVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEgGEAEFIFgTYNMIDAAAEKrnGDEVYTLVDSqGLPYNWDA 83  baker's yeast
Q12406      3 LNRKCVVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEgGEAEFIFgTYNMIDAAAEKrnGDEVYTLVDSqGLPYNWDA 82  baker's yeast
6TDA_T      3 LNRKCVVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEgGEAEFIFgTYNXIDAAAEKrnGDEVYTLVDSqGLPYNWDA 82  Saccharomyces cere...
Feature 1                                                               #                # ###
4I6M_A     83 LEXQWRYLYDtqLKVSPEELPLVITXPAtngkpDXAILERYYELAFDklnvPVFQIVIEPLAIALSXGKSSAFVIDIGAS 162 Saccharomyces cere...
3WEE_B     83 LEMQWRYLYDtqLKVSPEELPLVITMPAtngkpDMAILERYYELAFDklnvPVFQIVIEPLAIALSMGKSSAFVIDIGAS 162 Saccharomyces cere...
5TGC_A     84 LEMQWRYLYDtqLKVSPEELPLVITMPAtngkpDMAILERYYELAFDklnvPVFQIVIEPLAIALSMGKSSAFVIDIGAS 163 baker's yeast
Q12406     83 LEMQWRYLYDtqLKVSPEELPLVITMPAtngkpDMAILERYYELAFDklnvPVFQIVIEPLAIALSMGKSSAFVIDIGAS 162 baker's yeast
6TDA_T     83 LEXQWRYLYDtqLKVSPEELPLVITXPAtngkpDXAILERYYELAFDklnvPVFQIVIEPLAIALSXGKSSAFVIDIGAS 162 Saccharomyces cere...
Feature 1       #                    #   #                                      #  ##         
4I6M_A    163 GCNVTPIIDGIVVknaVVRSKFGGDFLDFQVHERLaplikeendxenxadeQKRSTDVWYEASTWIQQFKSTXLqvsekd 242 Saccharomyces cere...
3WEE_B    163 GCNVTPIIDGIVVknaVVRSKFGGDFLDFQVHERLaplikeendmenmadeQKRSTDVWYEASTWIQQFKSTMLqvsekd 242 Saccharomyces cere...
5TGC_A    164 GCNVTPIIDGIVVknaVVRSKFGGDFLDFQVHERLaplikeendmenmadeQKRSTDVWYEASTWIQQFKSTMLqvsekd 243 baker's yeast
Q12406    163 GCNVTPIIDGIVVknaVVRSKFGGDFLDFQVHERLaplikeendmenmadeQKRSTDVWYEASTWIQQFKSTMLqvsekd 242 baker's yeast
6TDA_T    163 GCNVTPIIDGIVVknaVVRSKFGGDFLDFQVHERLaplikeendxenxadeQKRSTDVWYEASTWIQQFKSTXLqvsekd 242 Saccharomyces cere...
Feature 1                                                                                     
4I6M_A    243 LFELERYYKEQADIYAKQQEQLKQxdqqlqytaltgspnnplvQKKNFLFKPLNKTLTLDLKECYQFAEYLFKPQLIsdk 322 Saccharomyces cere...
3WEE_B    243 LFELERYYKEQADIYAKQQEQLKQmdqqlqytaltgspnnplvQKKNFLFKPLNKTLTLDLKEXYQFAEYLFKPQLIsdk 322 Saccharomyces cere...
5TGC_A    244 LFELERYYKEQADIYAKQQEQLKQmdqqlqytaltgspnnplvQKKNFLFKPLNKTLTLDLKECYQFAEYLFKPQLIsdk 323 baker's yeast
Q12406    243 LFELERYYKEQADIYAKQQEQLKQmdqqlqytaltgspnnplvQKKNFLFKPLNKTLTLDLKECYQFAEYLFKPQLIsdk 322 baker's yeast
6TDA_T    243 LFELERYYKEQADIYAKQQEQLKQxdqqlqytaltgspnnplvQKKNFLFKPLNKTLTLDLKECYQFAEYLFKPQLIsdk 322 Saccharomyces cere...
Feature 1                                                                              ### ## 
4I6M_A    323 fspeDGLGPLXAKSVKKAgasinsxkantstnpnglgtshintnvgdnnstasssnisPEQVYSLLLTNVIITGSTSLIE 402 Saccharomyces cere...
3WEE_B    323 fspeDGLGPLMAKSVKKAgasinsmkantstnpnglgtshintnvgdnnstasssnisPEQVYSLLLTNVIITGSTSLIE 402 Saccharomyces cere...
5TGC_A    324 fspeDGLGPLMAKSVKKAgasinsmkantstnpnglgtshintnvgdnnstasssnisPEQVYSLLLTNVIITGSTSLIE 403 baker's yeast
Q12406    323 fspeDGLGPLMAKSVKKAgasinsmkantstnpnglgtshintnvgdnnstasssnisPEQVYSLLLTNVIITGSTSLIE 402 baker's yeast
6TDA_T    323 fspeDGLGPLXAKSVKKAgasinsxkantstnpnglgtshintnvgdnnstasssnisPEQVYSLLLTNVIITGSTSLIE 402 Saccharomyces cere...
Feature 1                                   #                                 
4I6M_A    403 GXEQRIIKELSIRFpqyKLTTFANQvXXDRKIQGWLGALTXANLPSWSLGKWYSKEDYETLKRD 466 Saccharomyces cerevisiae S288C
3WEE_B    403 GMEQRIIKELSIRFpqyKLTTFANQvMMDRKIQGWLGALTMANLPSWSLGKWYSKEDYETLKRD 466 Saccharomyces cerevisiae S288C
5TGC_A    404 GMEQRIIKELSIRFpqyKLTTFANQvMMDRKIQGWLGALTMANLPSWSLGKWYSKEDYETLKRD 467 baker's yeast
Q12406    403 GMEQRIIKELSIRFpqyKLTTFANQvMMDRKIQGWLGALTMANLPSWSLGKWYSKEDYETLKRD 466 baker's yeast
6TDA_T    403 GXEQRIIKELSIRFpqyKLTTFANQvXXDRKIQGWLGALTXANLPSWSLGKWYSKEDYETLKRD 466 Saccharomyces cerevisiae S288C

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