1J5N,1CG7


Conserved Protein Domain Family
HMG-box_NHP6-like

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cd01390: HMG-box_NHP6-like 
Click on image for an interactive view with Cn3D
high mobility group (HMG)-box found in Saccharomyces cerevisiae non-histone chromosomal proteins NHP6A, NHP6B and similar proteins
This subfamily includes Saccharomyces cerevisiae high-mobility-group proteins NHP6A and its closely related paralog NHP6B. NHP6A and NHP6B seem to be functionally redundant. They are DNA-binding proteins that induce severe bending of DNA and are required for DNA-binding by the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. They augment the fidelity of transcription by RNA polymerase III independently of any role in the FACT complex. They may also play essential roles in transcriptional initiation fidelity of some but not all tRNA genes.
Statistics
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PSSM-Id: 438792
Aligned: 18 rows
Threshold Bit Score: 96.2828
Created: 13-Oct-2021
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA binding
Conserved site includes 36 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:aromatic residues interact directly with the DNA backbone
  • Structure:1J5N; Saccharomyces cerevisiae non-sequence-specific HMGB (Nhp6a) binds SRY DNA, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         ########     ########  ##  #   #      ##  ###  ## ##      #   #  #   #  #   #  
1J5N_A         8 KKRTTRKKKDPnaPKRALSAYMFFANENRDIVRSENPdiTFGQVGKKLGEKWKALTpeEKQPYEAKAQADKKRYESEKEL 87  Saccharomyces c...
1CG7_A         8 KKRTTRKKKDPnaPKRALSAYMFFANENRDIVRSENPdiTFGQVGKKLGEKWKALTpeEKQPYEAKAQADKKRYESEKEL 87  baker's yeast
P11633        14 KKRTTRRKKDPnaPKRGLSAYMFFANENRDIVRSENPdvTFGQVGRILGERWKALTaeEKQPYESKAQADKKRYESEKEL 93  Saccharomyces c...
Q7S045        13 KVEKRRAKKDPnaPKRGLSAYMFFANEQRENVREENPgvSFGQVGKILGERWKALSdkQRAPYEAKAAADKKRYEDEKQA 92  Neurospora cras...
XP_018224315  12 KVSGKRAKKDPdaPKRGLSAYMFFAQEHRELVKTENPdaTFGQIGKILGERWKNLSskDKQPYENRARKDKERFEDEKSR 91  Pneumocystis ca...
P11632         8 KKRTTRKKKDPnaPKRALSAYMFFANENRDIVRSENPdiTFGQVGKKLGEKWKALTpeEKQPYEAKAQADKKRYESEKEL 87  Saccharomyces c...
KDQ54550     548 KAPRAKAKKDPnaPKRALSAYMFFSSDWRERIKAENPdaGFGEVGKLLGAKWKEMDdeEKKPYVEQAAKDKERAEEEKAA 627 Jaapia argillac...
CDH53379     115 SVDGGKKRKDPnaPKRGRSAYMFFSQEQRSTVKEENPeaTFGDIGKLLGQKWKELTdeEKKPYQDKAVADKQRYEEEKAM 194 Lichtheimia cor...
PLW50708      76 KTKRVKRDKDPnaPKRPLSAYMYFSQDWRERIKIENPdcSFGDIGRLLGQKWKGLSeeDKKPYEDMASVDKKRHEAEKAE 155 Puccinia corona...
TEY44440     142 RINPQNKKKDPnaPRRGMSAYMFYANDQRDRVRQENPvlSFGQLGILLGEEWKALSvgQRSMYEEMAAKDLRKYEEDFAR 221 Botryotinia cal...
Feature 1        #
1J5N_A        88 Y 88  Saccharomyces cerevisiae
1CG7_A        88 Y 88  baker's yeast
P11633        94 Y 94  Saccharomyces cerevisiae S288C
Q7S045        93 Y 93  Neurospora crassa OR74A
XP_018224315  92 W 92  Pneumocystis carinii B80
P11632        88 Y 88  Saccharomyces cerevisiae S288C
KDQ54550     628 Y 628 Jaapia argillacea MUCL 33604
CDH53379     195 M 195 Lichtheimia corymbifera JMRC:FSU:9682
PLW50708     156 Y 156 Puccinia coronata var. avenae f. sp. avenae
TEY44440     222 Y 222 Botryotinia calthae

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