Conserved Protein Domain Family
NFACT-R_1

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pfam05670: NFACT-R_1 
NFACT protein RNA binding domain
This domain occurs in proteins that have been annotated as Fibronectin/fibrinogen binding protein by similarity. This annotation comes from Swiss:O34693 where the N-terminal region is involved in this activity. It is an RNA binding domain of the NFACT (NEMF, FbpA, Caliban, and Tae2) proteins. This NFACT-R family is found in two eukaryotic gene contexts: fused to the NFACT-N and NFACT-C domains in the NFACT protein involved in the ribosomal quality control pathway which contributes to CAT-tailing and as a standalone domain. Additionally this domain contains a conserved motif D/E-X-W/Y-X-H that may be functionally important.
Statistics
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PSSM-Id: 428576
Aligned: 36 rows
Threshold Bit Score: 101.151
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_005534898                  1 MPYVYDcdELQGYILFLGRDKYENDALLEYSLPL-DWWFHVDKHSSAHVYVRpkrrlfeLSETSggtayelsaaplEPPT 79  
SPQ94981                    439 KFHWFI--TSDNFMVIGGRDAQQNELVVRRHLNAnDLYFHADLHGASSVVLL-------NPDNVq-----------PIPP 498 
EEC51092                    600 KFHWFV--TSDNYLVLGGKDAHQNELLVKRYLRAgDAYLHAEVHGAASCILRakr--rrLPNGAtq--------siPLSD 667 
ODN03333                    500 KFRWFI--TSENYLVLGGRDAQQNELLVKKYMRPrDIYLHADAHGAPSIIIKn------DNPED------------QVPP 559 
XP_012770199                549 KFHWFV--TSDGFLVLGGRDSTQNELLVKRYLTKgDLYFHADVHGGSSCILKn------PNGTA------------ESFP 608 
KHN69476                    421 KFHFFF--SSDGTVVIGGKNSQQNEILVKKYLCDeDLYFHSGAHGCSSVIVK------------------------KESE 474 
EOD42521                     68 KFRWMF--TTNNFLLIAGKDSITNEIIINKYLEKnDLVFHADIVGSPFGILK---------NGR------------NASE 124 
FidelitySystems:Mia14_0136   68 KFHWFF--TTGNLLAIGGRDAQQNELLNSKYFEDhDLFFHANIFGASVVILK---------DGL------------NASK 124 
EXX69639                    520 KFVWFI--SSENYLVIAGHDMQQNELLVKRYLRKgDVYVHAELHGAASVIIKn------PNEGQ------------PIPP 579 
A0CRJ5                      483 KFFWFI--SSDGYLVISGKDVQQNEMIVKRYMNKdDIYMHADIYGSASTIVK-------NPSEG------------PIPE 541  Paramecium tetraurelia...
XP_005534898                 80 EVVRAAAAVAKENSIE-GAKQsFVHVVYTPASNLLKSGD----MGPGQVGFRD 127 
SPQ94981                    499 RSLEEAAAFTICRSAAwESRT-VISAYWVHADQVSKTAPtgmfITTGSFMIRG 550 
EEC51092                    668 QALREAGNFTICRSSAwASRM-VTSAWWVESHQVSKTAPsgefLTVGSFMVRG 719 
ODN03333                    560 KTLNEAGGFGVCCSGSwDSKV-VSSCWWVWGDQVSKSAPsgeyLPSGSFMIRG 611 
XP_012770199                609 NSIEEAACFAICLSSAwTQKM-VVPAWWVHHDQVSRSAPtgeyLPHGSFMIRG 660 
KHN69476                    475 NTIKEAAAMTLCMSSCwANGV-VSQIWYVYGNQVSKTPPsgeyLPKGSFAIKG 526 
EOD42521                    125 IDIYEAAKFVGSYSRAwKNKLsSIDVYYVYPDQVSKKAPsgmyLKKGSFMIYG 177 
FidelitySystems:Mia14_0136  125 DDKEECAQFSASYSSAwNKMQgEVDVYCMRRDQVSKSTNkg-sLGTGSFLLKG 176 
EXX69639                    580 STLFQAGVMSVCQSKAwEAKI-ITSAYWVHAEQVSKTAPtgeyLTTGSFMIRG 631 
A0CRJ5                      542 ATIMQAATATICRSKSwDAKI-VVSAWWVHASQVSKSAPtgmnIPAGSFMIYG 593  Paramecium tetraurelia
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