Conserved Protein Domain Family
Rv2179c-like

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pfam16473: Rv2179c-like 
3'-5' exoribonuclease Rv2179c-like domain
This is a highly divergent 3' exoribonuclease family. The proteins constitute a typical RNase fold, where the active site residues form a magnesium catalytic centre. The protein of the solved structure readily cleaves 3' overhangs in a time-dependent manner. It is similar to DEDD-type RNases and is an unusual ATP-binding protein that binds ATP and dATP. It forms a dimer in solution and both protomers in the asymmetric unit bind a magnesium ion through Asp-6 in SwissProt:P9WJ73. Proteins containing this domain also include 3'-5' exonuclease dexA from bacteriophage T4. It may play a role in the final step of host DNA degradation, by scavenging DNA into mononucleotides.
Statistics
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PSSM-Id: 406788
Aligned: 27 rows
Threshold Bit Score: 83.2477
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_002124315      3 LDIMTDIETLGTN--SDSTIIQISAIAFD--IETG---------EYHEEFNRVAD----------------------IS- 46  Bacillus cereus
WP_006314272      4 TDLMIDLETLGTA--VNAPVVAIGAVFFN--PETGel-----geTFDAAIDVEDA----------------------MRy 52  unclassified...
utah:SOPEG_2103   2 NNVMLDIETLGKK--ASCPIVSVAAVLFE--PATGrv-----gqTFYARIDYQAA----------------------RQy 50 
utah:SOPEG_3576   3 NHLMIDIETLGVR--ASAPLAAIGAVFFE--PSTGql-----gkAFYARVDPRSD----------------------EAa 51 
WP_013612671      3 NFAAIDFETANNE---RSSVCSIGIVIVrgee---------ivdTFYSLIKPEPE------------------------- 45  Odoribacter ...
Q3BZ71            9 TYLFLDTEWA--Da-EGLELVSIALV-----SEDGa-------sTFYAERDPLPLaptefvktrv--------------- 58  Xanthomonas ...
EKX89786         12 VRFFYDTEFI--EdgETIELISIGIV-----GDDGr--------EYYAVSTD-FDparagewvrnnv------------- 62 
Q3M2V1            1 MKYFIDTEFI--EdgQTIDLISIGIV-----CEDGr--------EFYGINWD-CDfkhaskwvqenvlihlpfrpvnEPt 64  Trichormus v...
AFH22695          3 DRVMIDIETLGRE--PGCVICSIGGAKFdtre---------vgeTFEASVDITSC----------------------QEf 49 
AFH22640          3 DRIMVDIETLGRD--PGCAIVEIGAVEFVagPVVGdgdadpigaTFATSVGLESC----------------------QTa 58 
WP_002124315     47 -KNVNPiqvtgATLQWWSNTNIELYKQLL--NSG---------MGSSEKILLDFNIWLKNL---S------------HQG 99  Bacillus cereus
WP_006314272     53 -gKASG-----STIRWWLGQGDAARQKVV--RGK----------HPSHLVFTKFHEFCLKHg-----------------D 97  unclassified...
utah:SOPEG_2103  51 -gQPEE-----ETLLWWQKQSDEARQEAF--GGK---------ARPDVVA-RALRTFIATHc----------------AK 96 
utah:SOPEG_3576  52 gARAEV-----DTALWWLRQDTEARAELI--IEP---------RSSARDALNAFLNYINASqipA------------GRK 103
WP_013612671     46 ------------------------YYNYWcsQVHglcsndttdAPIFPEVWKQIEPLI---------------------K 80  Odoribacter ...
Q3BZ71           59 ----------------------------------ypllqrgfhALSDPSLAQALFAFLmdqr------------------ 86  Xanthomonas ...
EKX89786         63 --------------------------------lnqlpnpnsseWKSLDTIRTDLEKFLhvpg------------------ 92 
Q3M2V1           65 pn--------------------------------------tqnWYTKKDLKLAVLDFLgctygtpgslcpgkyylsnhis 106 Trichormus v...
AFH22695         50 gLEIDA-----ETLTWWLTQSSEARAQLV--GGD-----------GLADTLADLNRFI--------------------GD 91 
AFH22640         59 gLEIDA-----GTLAWWLKQDAPARGQLQ--GGE-----------TLSRALREFREFV--------------------AE 100
WP_002124315    100 DLYLWGNGILFDNKMIQHQFELLGL------T--YPIFY--KNDRDVRTIVDLA---SKkLGVsEKELKKQFEdenLVHH 166 Bacillus cereus
WP_006314272     98 NVKPWGNGASFDISILEYAFGRIIE------Ks-APWKF--WNVCDCRTIKRLA---DG-IVTfDEKLE-------GTAH 157 unclassified...
utah:SOPEG_2103  97 PRVPWGNGAIFDIALLESWFDRVDPqkddqgNdrYPWSF--WDVADLRTLVRLS---GI------DVRAIPFA---GEKH 162
utah:SOPEG_3576 104 HLNIWCKGGNFDVGILDAAFERHGL------P--IPWHY--WRVRDMRTLQCLA---QA-TGYcSPARQI-------LKH 162
WP_013612671     81 GLPLVAHNKPFDESCLKAVFRVy-------qMdyPD-------YEFYDTLCASRqafPElENHqLHTVAATCGyqlENHH 146 Odoribacter ...
Q3BZ71           87 sphVIADYPN-DLRLLREVMSWgsvakgmderpglpctlmdrdpvttshlerwfrlnPElSRSr---------------H 150 Xanthomonas ...
EKX89786         93 gaeLWAWVGCYDHVVLAQL--Wgdmpalprhipr------ftrelkqywefaGKpqlPDlESGk---------------H 149
Q3M2V1          107 kpeFWGYYADYDWVVFCQL--Fgrmidlpqgfpm------ycrdikqwcdqlGNpklPEqGKGe---------------H 163 Trichormus v...
AFH22695         92 ADEVWANSPSFDLAILEAAFESCGV------S--APWEF--YEERDFRTIKNLG-----------IDHGIEQE---GIEH 147
AFH22640        101 ADEVWANSPAFDIAILEAAFEAVGL------S--APWRY--WMTRDYRTMREVL----------SASGDWPDReqsGTDH 160
WP_002124315    167 NAFDDVKYQINLVAGCY 183 Bacillus cereus
WP_006314272    158 TALDDAKHQAKWVSVYW 174 unclassified Agrobacterium
utah:SOPEG_2103 163 HALADALHQVKIAHTAW 179
utah:SOPEG_3576 163 HTGEDAYYQAQVVAEIW 179
WP_013612671    147 HALADAEACAWIAREIL 163 Odoribacter splanchnicus
Q3BZ71          151 HALVDANGLRMAWLVST 167 Xanthomonas campestris pv. vesicatoria str. 85-10
EKX89786        150 NALEDARHNVRKFQACM 166
Q3M2V1          164 SAIADAKWNKTAWEFLQ 180 Trichormus variabilis ATCC 29413
AFH22695        148 DAVDDAVHQATIAATVL 164
AFH22640        161 DALDDARYQARCLSEGL 177
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