2HJ1


Conserved Protein Domain Family
Ub-RnfH

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pfam03658: Ub-RnfH 
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RnfH family Ubiquitin
A member of the RnfH family of the ubiquitin superfamily. Members of this family strongly co-occur in two distinct gene neighborhood contexts. In one it is associated with a START domain protein, a membrane protein SmpA and the transfer mRNA binding protein SmpB. This association suggests a possible role in the SmpB-tmRNA-based tagging and degadation system of bacteria, which is interesting given that other members of the ubiquitin system are analogously involved in protein-tagging and degradation across eukaryotes and various prokaryotes. The second context in which the RnfH genes are present is in a membrane associated complex involved in transporting electrons for various reductive reactions such as nitrogen fixation.
Statistics
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PSSM-Id: 427429
Aligned: 150 rows
Threshold Bit Score: 81.3238
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2HJ1_A        13 INIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTDVLKEGDRIEIYRPLLADPKE 92 
Q63T36         2 pKVQVCYALPERQTLVAVDVPAGASVRDAIAASGVLALHPDIDASALKTGIFGKLAPLDAPVADGDRVEIYRPLIVDPKL 81  Burkholderia ps...
CBW75050      17 IEVQVCYALPDTQTLVALRLPIGATLREAIEASGIVAMHPQIDLAQQRVGVFGRIRALDSVLENGDRVEIYRPLTVDPKL 96 
Q13XD8         5 lSIEVCYASAGEQALIAVELPEGATLRQALDASGILRRFPQIDLDTQKVGVFGKLKPLDAVLNDHDRVEIYRPLLVDPKV 84  Paraburkholderi...
B2JIA4         5 lTVQVCYALPGEQTLIQLQLPPGVTLRQAIDASGVLTRHPEIDLTKHKTGVYGKLKPLDAVLADHDRVEIYRPLIVDPKL 84  Paraburkholderi...
WP_015875346   2 pAVQVCYALPTQQTLIDLDVPENTTVRAAIEASGIVARHPEIDLSVAKTGVFGKLAPLDAVLRDGDRVEIYRPLVVDPKA 81  Burkholderia gl...
WP_013234182   7 LQVQLCYAAPGLQILRDLEVQSGCTIQQAILDSGLLRQHPAIDLSACKVGIFGKVKPLETPLRQRDRIEIYRPLIADPKQ 86  Herbaspirillum
WP_011516207  14 vRLSVCYARPDTVFLKELDVPAGTTIIGVIEASGLTQACPEVDPSTLRVGVYGKLKTLDTPVRQGDRVEVYRVLTADPKT 93  Cupriavidus met...
Q0KA38        11 vHIAVCYARPDSVFLKEIDVPAGTTIAAAIVGSGLQQACPEVDPSTMRVGIFGKLKTPETVVREGDRVEVYRPLTADPKQ 90  Cupriavidus nec...
CAL61530      12 IHIQICYAREDKQFLLDQTVPPGTTIQQAIQGSGIIQLAPEIDVSVWRVGIYSKLKTLDTVLREHDRVEIYRPLIADPKD 91 
2HJ1_A        93 IRR 95 
Q63T36        82 ARQ 84  Burkholderia pseudomallei
CBW75050      97 ARQ 99 
Q13XD8        85 SRQ 87  Paraburkholderia xenovorans LB400
B2JIA4        85 ARQ 87  Paraburkholderia phymatum STM815
WP_015875346  82 ARQ 84  Burkholderia glumae
WP_013234182  87 SRR 89  Herbaspirillum
WP_011516207  94 ARR 96  Cupriavidus metallidurans
Q0KA38        91 ARR 93  Cupriavidus necator H16
CAL61530      92 SRR 94 
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