2CGL,4C23,2CGJ,2UYT


Conserved Protein Domain Family
ASKHA_NBD_FGGY_RhaB-like

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cd07771: ASKHA_NBD_FGGY_RhaB-like 
nucleotide-binding domain (NBD) of rhamnulokinase (RhaB) and similar proteins
Rhamnulokinase (EC 2.7.1.5), also known as L-rhamnulose kinase, ATP:L-rhamnulose phosphotransferase, L-rhamnulose 1-kinase, or rhamnulose kinase, is an enzyme involved in the second step in rhamnose catabolism. It catalyzes the ATP-dependent phosphorylation of L-rhamnulose to produce L-rhamnulose-1-phosphate and ADP. Rhamnulokinase exists as a monomer composed of two large domains. The ATP binding site is located in the cleft between the two domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of divalent Mg2+ or Mn2+ is required for catalysis. The subfamily also includes Streptococcus pneumoniae L-fuculose k fuculose Kinase inase (FcsK) that uses ATP to phosphorylate fuculose creating fuculose-1-phosphate, and Alkalihalobacillus clausii bifunctional enzyme RhaA/RhaB. Members of this subfamily belong to the FGGY family of carbohydrate kinases.
Statistics
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PSSM-Id: 466791
Aligned: 128 rows
Threshold Bit Score: 371.091
Created: 10-Jun-2009
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 28 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:active site includes ATP, carbohydrate, and metal binding residues
  • Structure:2CGL; Escherichia coli L-rhamnulose kinase binds ADP, beta-L-fructofuranose, and phosphite ion, contacts at 4A
  • Structure:2CGJ; Escherichia coli L-rhamnulose kinase binds L-fructose and ADP, contacts at 4A
  • Structure:2UYT; Escherichia coli L-rhamnulose kinase binds ADP and beta-L-rhamnulose, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # #### #                                                                   
2CGL_A         5 NCVAVDLGASSGRVXLARYere--crsLTLREIHRFNNglh----sqNGYVTWDvDSLESAIRLGLNKVCAag---iaID 75  Escherichia coli
WP_014463543   7 NVVAVDLGSTSGRVYRVSFdg----rkLYLSEIHRFSNgpv----vtSGSVAWNlYRIIDSALMGLRKALEms----nVI 74  Alicyclobacillu...
WP_066761448   3 CCLVIDISKINLKIISVVLre----dkIFMQEIHRCSKili---rnkDSKLSLNiDKIIKEINEALVSVKQig---ynVE 72  Candidatus Arth...
WP_073073712   4 RYLAIDFGASSVKAVVGEFdg----arVKILERKRYNNeyl----knNSFYLWNlGSFVDIVFHAVDWAKEky----nIL 71  Thermosipho atl...
OYW01981       7 RHIAIDLGASGGRVALGAVeg----grLSFDILHRFPNrav----plGASLYWDmLELWREIRHGLRIASGqg----pVA 74  Acidiphilium sp...
PYP14724       7 SYLAIDLGASSGRAVLGTLqrlpegwrVATREVHRFRVpmi----eqAGHLYWHvDALWDELRTALAGALDta---ptLR 79  Gemmatimonadete...
RLD91255       9 CSIAVDMGAGSIRVMLATLrd----naFSLEEIHRFDNeir----vqDGRDTWDmDYISREIVSGISKAIEvse--lvPE 78  Bacteroidota ba...
RLS87526       6 RHIAIDLGASSGRVMEVRIgs----geLTVRELHRFNNapvkasrsgSLTMCWPfETMFDSILDGLRIAAVdg----dVD 77  Planctomycetota...
TKZ25025      54 AYLAFDLGASSSRAILGRLeg----drLQMEELHRFSTpii----eeGEQLYWDlDVLWSEFQTGLQRALNat---prLY 122 Hormoscilla sp....
KAB2648890     6 YCAAIDLGATSGRVILGQWks----nkLTLKEAHRFSNhfd----tiGGHDYWNiGALWNEVLTGIKKATQllpksakLH 77  Verrucomicrobia...
Feature 1              ###                 #                                                     
2CGL_A        76 SIGIDTWGVDFVLLDqqgqRVGLPVAYRDSRt-nGLXAQAQQq-lGKRDIYQRSGiqflpfNTLYQLRALTEQqpeliph 153 Escherichia coli
WP_014463543  75 SVAIDSWGVDFGVFTvsgeCSGVVSCYRNPKn-eEYVQHIRRk-vPESLVYKNTGipisgiNTSTQLVRMLDNhev---v 149 Alicyclobacillu...
WP_066761448  73 SISVNSSINEFVLLDehdnLVRDIFVEYSLNs--NYLNKIINe-lGMAYIYRKTGisfnlnNALYKLMMYRDLypedflk 149 Candidatus Arth...
WP_073073712  72 SFAIDSWGVDFGIVFknspFLIFPFHYRNMFehtDIVNKTIKelgGGYFLFKKTGvfphpyNTLFQIELLKTLepr--if 149 Thermosipho atl...
OYW01981      75 SIGVTTWGVDYALFDadalPIGMVHSHRDRRt-eGVIDTLDEt-mPRADLYQATGvqflpiNTLPQLLAAKRAspdlfsr 152 Acidiphilium sp...
PYP14724      80 SVSVDSWAVDYVPLGadgaPLRLPYAYRDPRt-rGRLAEVFRr-iDPDALYAVTGiqclefNTLPQVVADLMDepavvar 157 Gemmatimonadete...
RLD91255      79 SVGVDTWGVDFVLLDrngdLVETPVAYRDKRt-eGMQEKWKKi-mPKQETFSRTGinfyifNTLFQLLSAKDSkal--qr 154 Bacteroidota ba...
RLS87526      78 SIGVDSWAVDYALLDeegeLVRPIAAYRDPRt-qAAYRELREq-lGDEFIYRATGiafqpfNTLYQLATDARDplrpfer 155 Planctomycetota...
TKZ25025     123 SLSVNSIGLDYVPLNvdrnPVRNAYSYRSPRk-lGMRAKALQk-vSASELYEATGihfmeeNTLPQVLADLEQesellae 200 Hormoscilla sp....
KAB2648890    78 SVGVDTWGVDYVLLNddgrLVFPVHAYRDLRt-qPGLKHLKQtraAASRIFAATGvppvfyNTSLQLEETIQNcpsitdl 156 Verrucomicrobia...
Feature 1                                                                                        
2CGL_A       154 iAHALLX--PDYFSYRLTGkXNWEYTNatTTQLVNInsDDWDESLLAWSGankaWFGRPTHPG--NVIGHWIcpq----- 224 Escherichia coli
WP_014463543 150 eGRVLFI--AGILANKLCGsWAVERSIasTTQLYNQhiGEWDGALVSALGirdiILPDIVTPG--SVLGELTipeq---- 221 Alicyclobacillu...
WP_066761448 150 vRKILSF--SDYINYRLTGeIFHERAQlsLTQIFNFknQDIDEDILNYLDlkdrLEFNLVDYG--KSVGKCKin------ 219 Candidatus Arth...
WP_073073712 150 yKHFLILniPQLLIYLLGNkEFAEYTLatTTQLYSIenKDWDEEILGFLGikkeNMGAIRIPA--GIAGQFNg------- 220 Thermosipho atl...
OYW01981     153 aTRFLML--PDLIHYWLCGvVACEHTNasTTQLYDPvrRDWSNTVLTAFGipraMFPDLVEPG--TILGPLLpaiaad-- 226 Acidiphilium sp...
PYP14724     158 tETRLLI--ADYFLYRLSGrPVAERTMasTTQLFDVraGGWSREVIRAAGddpaRWPAIVNPG--TILGPVLpdvlpatv 233 Gemmatimonadete...
RLD91255     155 tSKILFV--PCYINYLLSGrMVNELTIasTSQMLAVegGEWDEMILEKLDldvdKLGKVVQPG--TILGPLLlpet---- 226 Bacteroidota ba...
RLS87526     156 aQYLLML--PDYVAYRLCGaKVCERTNasSTQMLDVhtRNWNEELVAATGaplrILPRLINAGnaAPLGTLLdelade-- 231 Planctomycetota...
TKZ25025     201 tANRLMM--ADYFNYRFSGrAVAEVSLasTTGLLDVqsRTWARELMARFGipadSWPEIVPSG--TRLGSVTtn------ 270 Hormoscilla sp....
KAB2648890   157 aSRCLFL--PDYFNYLLSGrMENEFSIssTSQLLDVntKDWSRTALDYFRvpphWFSKPVFSG--TRLGGLSkaiiad-- 230 Verrucomicrobia...
Feature 1                      ###                    #### #                                  #  
2CGL_A       225 ---gneIPVVAVASHDTASAVIASPln--gsRAAYLSSGTWSLXGFESQtpftNDTALAANITNEGGAe-GRYRVLKNIx 298 Escherichia coli
WP_014463543 222 ---rtrAKVISGLEHDTQAATFCLGpd---sEELFICSGTWSLVGTTLSrpvlSEAAMNAKWSNERGF--WGIDFLKNLp 293 Alicyclobacillu...
WP_066761448 220 -----gVEVIAPYGNNLLSSFLTTDvt--nkNSIFIVNSYEGIIGCTENfs-kMYLEGIKFDLNHQLFneELVKIFKYIp 291 Candidatus Arth...
WP_073073712 221 ------VDIINISSHDTACAFNTLPfe--deETLIISSGSWNVIGVKVDkpilNEDVYKRQFSNEGTFe-GKFRLVSNTp 291 Thermosipho atl...
OYW01981     227 -tglvgTIVIAPATHDTASAIAAIPaea-geDWAYISSGTWCLAGIERPrpliSEAARRANITNEQGIa-GTTRLLKNTs 303 Acidiphilium sp...
PYP14724     234 rgtghrPLVVASCSHDTAAAVAAVPasg-dePWAYISSGTWSLVGAELRapvlTAAARRAGFTNEVGLd-GTIRFLKNRt 311 Gemmatimonadete...
RLD91255     227 --gekrIECVAVCGHDTACVVAALPve--npNFTYISAGTWCIVGVESTrpliSEEALKLGFTNERGYg-NSYRSLKNIv 301 Bacteroidota ba...
RLS87526     232 tglsnsTPVMASATHDTASAVIAAPid--pkHDLYISSGTWSLVGAELPaavlSDEARKANMTNELGAf-RSTRFLRNVa 308 Planctomycetota...
TKZ25025     271 ----pdVTVIAGCSHDTACAVAAVPaspksePWAYLSCGTWSVFGVERTtpflTEVARQQEFTNEVGLd-GSVRLLRNMt 345 Hormoscilla sp....
KAB2648890   231 svalkkTVVIAVPGHDTACAYDAMPahp-egSDLFISSGTWSLVGFESPepllGEEAVVAGLSNERRGn-GGYRPLKNVi 308 Verrucomicrobia...
Feature 1         #   #               #   #                                                      
2CGL_A       299 GLWLLQRVLQERqi-----ndLPALIAATqalpacRFIINPNDdrfi----npdeXCSEIQAACREXaqpipesDAELAR 369 Escherichia coli
WP_014463543 294 GMWIMERLFSEMsmp---regLDDIILKAaasdkfQFLFDITDprff----spssMISELKHYAKEMdlalpdeIPVLYR 366 Alicyclobacillu...
WP_066761448 292 CYRLVDDFLKNVenny-mienAWNVMNDNef---iDYIIDFDSdifr----nsaaLINTVKYYFEFKlnslpdsISNFIR 363 Candidatus Arth...
WP_073073712 292 GFWILEEILRELnykg-krvdYDMMLKLAststldDYYVSLKKvdfq----tpgnIISKLKNEIKEIr-----nINDVIR 361 Thermosipho atl...
OYW01981     304 GLFILQECLRAWgd-----ppIEPILQDAaal-csDVAIDPTEpefah---pgvtMPDRILRWCAARgivldpaPAVITR 374 Acidiphilium sp...
PYP14724     312 GMWVLEECLREWaadd-sriaWEALFAEAags-asGQVIDLDApqfg----erggMVAKLAAACHDTgapvpatRGETCR 385 Gemmatimonadete...
RLD91255     302 GLWLLQGLKKQLaad----isFSQMEEMVqgsgetSQVIDPDDpgfy----npenMKEAFDRYFEKTrqplpvrFKDYIR 373 Bacteroidota ba...
RLS87526     309 GLWLVQQCEAAFereg-rkrsWSELAALAssepsmTSLINPDDpmffeagtlagdMPQRIRAVCGARgeivpatDGALIR 387 Planctomycetota...
TKZ25025     346 GLWVLQECEREWknsg-erydYETLLREAgaapdrGVSIDFNEsrfr----lrgnMQQKIQDYCREQkmfvpqhRGELVR 420 Hormoscilla sp....
KAB2648890   309 GLWLLEGIMKDFssrptsdqaWAKLIKSAeqlsapKQLLDVADpsft----npisMKKAIDLQLTKRrliapknLAGYTR 384 Verrucomicrobia...
Feature 1                                       ### ##                                           
2CGL_A       370 CIFDSLALLYADVLHELAQLrgedfSQLHIVGGGcQNTLLNQLCADACgIRVIAGPveASTLGNIGIQLXtldelnNVDD 449 Escherichia coli
WP_014463543 367 SFLESLVMTYKDAIREMIELtgeipKNVRLMGGGaKNRLLAKMIADATgLPVVRGPaeASVVGNALVQLVang-lvDASD 445 Alicyclobacillu...
WP_066761448 364 IVYDSFAVYYKKCIKDLEKItggifDSVCMVGDYsINNSYNQFIADIIlKDLEVGPkeSGIIGNAINQFIslgkikNISY 443 Candidatus Arth...
WP_073073712 362 VALNSVVNEVDIVFRFLKSIvg-glNRVYLVGGGvKNRLFCKLLSEKLkIPVFTGVseSSAIGNILSQIYiqekmkSIKD 440 Thermosipho atl...
OYW01981     375 AVLRGLAASVAASLAEIDQVanhqtRRIHIVGGGsRIDLLCQAIADCTnATVIAGPveATTAGNLLVQAAslg-viEHNA 453 Acidiphilium sp...
PYP14724     386 LVLESLADSYRRTLEELAVLtgiraRVVHIVGGGaRNRLLNQLTADACgRRVVAGPeeATALGNLLVQARtlgdlpDGVA 465 Gemmatimonadete...
RLD91255     374 CAYDSLCFSFRYHIEQLEKLsqnsiEVLHLVGGGsQSDYLCQRIASICeREVISGPveGAAMGNIIIQGIamgrikDLQA 453 Bacteroidota ba...
RLS87526     388 CVLDSIAIASARAAKDAACIashdaRRIVVVGGGsANDLLNQLIANAAgLPVETGPieCTAIGNALVQHAafegitSAEP 467 Planctomycetota...
TKZ25025     421 GILSSLASTYQKTLSALEEVieeriEVLHIVGGGaRNALLCQLTANTCgCQVVAGPveATAMGNLLIQARtmghlpNGVS 500 Hormoscilla sp....
KAB2648890   385 LICDSLGKGHADAKALFERLtgrkfKRILMVGGGsRNRLLCQATANAAgIPVISFNleGTAVGNIASQLIaskavkDLAT 464 Verrucomicrobia...
Feature 1                
2CGL_A       450 FRQVVSTT 457 Escherichia coli
WP_014463543 446 VSAVASSV 453 Alicyclobacillus acidocaldarius
WP_066761448 444 AYEILKNS 451 Candidatus Arthromitus sp. SFB-turkey
WP_073073712 441 LKTIIKNS 448 Thermosipho atlanticus
OYW01981     454 IRTVMRAT 461 Acidiphilium sp. 37-64-53
PYP14724     466 IRDVVRAS 473 Gemmatimonadetes bacterium
RLD91255     454 GRKLVKSF 461 Bacteroidota bacterium
RLS87526     468 LREMVRNA 475 Planctomycetota bacterium
TKZ25025     501 IREVVRNS 508 Hormoscilla sp. GUM007
KAB2648890   465 FRRLLGKT 472 Verrucomicrobia bacterium

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