Conserved Protein Domain Family
YkoV

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COG1273: YkoV 
Non-homologous end joining protein Ku, dsDNA break repair [Replication, recombination and repair]
Statistics
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PSSM-Id: 440884
Aligned: 348 rows
Threshold Bit Score: 266.599
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_013580487   2 ARPYWTGQITISLVSFGVKLFVATEaKGEIHFHQISRSTGERVRQQKVLASAQEaresapddapmaassMVKKDEIVKGY 81 
AKU95164      30 ARSVGSGTISFGLVSIPIKLYTATS-AKSVSFNMLHKTCGSRLKQQLLCATENT---------------VVERSDTIKGF 93 
WP_012828431   3 ARAHGSATLSFGLVSIPVKVYSSHQtGSQLSFHFIHDACGTRLKQQYICPTHDE---------------VVPRADIAKGY 67 
WP_013954364   3 ARSLASLSLSFGLVSIPVKLYTATEtSSAVRFNLLSK-DGARLKQQYVSEQTQK---------------VVERADMVKGY 66 
WP_014429952   3 ARPIASLSLGFGLVSIPVQLFSAAEpSAGVRLHLLAP-DGTRVRQQYVSEKSGK---------------RVERREMVKGY 66 
WP_015436571   3 ARSIASLTISFGMVAIPVKLYSATEtSKTVSFNMLHKGCGSRLKQQYVCLKEEV---------------VVPRDDIVKGY 67 
WP_082363387  36 ARATGSGTISFGLVTIPVKIYTATT-SHRVSFHMLHRKCGTRVRMQYFCPTDEK---------------VVARKDLIRGY 99 
WP_058934661   5 ARSIASLTLSFGLVNVPVRLYSATEpGSDVRFNLLDK-DGSRLKQQYVKERTRQ---------------VVERKDMMKGY 68 
WP_109037570   4 ARSIASLTLGFGLVSIPIRLYSATDsGASVRFHLLAP-DGSRLKQQYVSEQTGK---------------VVPRDQMMKGY 67 
WP_123043149   1 MQAFWKGTIQIAQLQVPIKLYSATE-EKGISFRQQHADCGNPISHLKYCQSCQT---------------EVENENIRKVY 64 
WP_013580487  82 EYTKGQYVIVEPKELSELRVPSKHTMEVIQFVDAEEIDPEYFEKPYFVVPEnDAQAPAFAVVRQALRDEKKIALSKIAFG 161
AKU95164      94 EYARDQYVKFTDEELKALEAARTDTLELVEFVPADTVDFLYIEKTQFLGPD-KGGERAYRLLSESLERAKRVAVGRFAQR 172
WP_012828431  68 EYAKGKHVQLTREEIKALEAVSDDAIALAEFVPADTVDPVYFDKAYYLGPA-KGGNRAYHLLGQAMRDTGLVGIARYAAR 146
WP_013954364  67 EFEKDRFVTFSPDELKALEESASHMVDIVAFIPEHSVDPLYYDKAYFIAPD-KRGGKPYSLLREAMSKTGRCAIAKWASK 145
WP_014429952  67 EFEKDRYVVFTPDELHELDEHDDPAIDIVAFVPADAVDPLYVDKAWLLAPD-KRGGKPYALLREAMRETGRCALARWTFR 145
WP_015436571  68 EFAKDQYVTFSPDELKALEETGSHSAEISEFVPIESVDPVYFDKAYYLAPD-KGGAKPYALLAQALRASGRCALGRWASH 146
WP_082363387 100 EYAHDQYVTLTEGELEQLEGERSERIDILEFVPEAAVDLTYLSDTHYLGPG-KGGDRAYALLAEAMTRTERLAVGRHGAR 178
WP_058934661  69 EVEKDHFVLFTPEELKNLEEGSSRVIDIVSFVPLSSIDPLFYDKSYLLAPD-KRGAKPYSLLAEAMRQSDRCALAKWAFK 147
WP_109037570  68 EVEKDQFVLFQPDELKRLEETASHVIDIVAFIPEGAVDPLYYDKAYLLAPD-KRGGKPYALLVAAMRESGQCALARWAWR 146
WP_123043149  65 DLGGGKFVEVSEEELQAIAPPADKTFRVQHFVRSSELEPHYWKKHYFVGVD-EVGGQAFELLRYSLLKMKRTGIGYVTMR 143
WP_013580487 162 GREHVVAITPTQDdslgGMMAYTMRYSEELRDPKEyFRDIK-KPAVDEDSLDLAKQLIKRKS-AKFDPAKFVDGYEVALK 239
AKU95164     173 GKDNLVLVRPYKK----GLILHECFYSDEVRSFDD-VE-TGgAFEFKPIELELADKLIQQLDrDKFEPERFRDAWADKVR 246
WP_012828431 147 GRENVVMVRPHQEa---GLVMHQLRYPDEVRTWDQ-IP-IDeAPAIDERELDLAKRLIDQIAsERFEPERYRDQVKERVL 221
WP_013954364 146 GKSHIVQIRPVEG----GLVFQQLLFADEVRNIAE-LH-IE-EVAVSDAELKLAMQLIEQASeGQYDPAQYKDEEKVRIL 218
WP_014429952 146 GKQSVVLVRPLDE----GLVLHTLLYADEVRRPAD-LG-IA-PLAVSKAELQLARQLIGQISqDRYDPAQFHDEERQRIQ 218
WP_015436571 147 GKQHVVMIRPVED----GLVMQQLLYGSDVRSIKD-LD-IP-HTEVKDAELKLAEQLIDQQAvDRFDPDAYTDAVRARIE 219
WP_082363387 179 GRDQLVLLRPYEG----GLIMHRLRYADEVRSMED-VD-FPrKVPFKQTEMDLAERLIDQLAaDEFDPERHRDDYRDRVV 252
WP_058934661 148 AKQYIVQVRADEH----GLILQQLRYAEEVRSLAD-LD-IE-TAPVSSTELQLALQLVDQIAaDTFDPAQFQDEEKARVL 220
WP_109037570 147 ARQHVVQVRATED----GLVLQQLLYADEVRSLKD-LA-IE-PVEVAPSELKLALQLIDQIStDRYDPTAFEDEERKRVL 219
WP_123043149 144 SVQQLAALWASKD----GLMLTTLHYADEVRAYPAa--NSSaVPEMTTELMQAFGSLVSGLS-VPYDPALYPNVHNESMI 216
WP_013580487 240 ELVQAKIDHAPIPKDea--paPKKSNVVSLMDALRKSIASPASEDTSDHeahe-----------eapaKKKPAAKHAAap 306
AKU95164     247 EAVEKKIAGEEVLTAp----eAPKAQIIDLLEALKRSVAAAPAAPASAPkae-------------apaSERAPAVVAKgp 309
WP_012828431 222 ALIEEKLAGREIEVAa----pTPRGEIIDLMEALKASLGAADADAEPARm-----------------pAKTAPRKTAT-- 278
WP_013954364 219 AAIDAKIAGKQIVSPepv-evTAGGQVIDLMDALRASLSKKGAPAGRAKaae--------------psTSRRVGKRGTap 283
WP_014429952 219 AAIERKIAGRQVVEQaph-eeRSGAQVIDLMDALRASLGPRGAKAAPASktaa-----------gprpQARKARDSSStg 286
WP_015436571 220 AAVQKKVEGQEITLTee---gEGRGQVIDLMEALRASLEKKAPATPAPQv------------------EARKPPKRARsa 278
WP_082363387 253 EAMEQKVAGEEITVAp----eVPKAKIIDLFEALKRSLAEHAPGKAHAGrkvkhaaaeaseeeeappaSHRTPTKSARrp 328
WP_058934661 221 AAIDEKVQGKEIVASahgeeePASGQVIDLMDALRSSLQKKRPAGKATNvtkl-----------kpapAARKPAKRAVta 289
WP_109037570 220 AAIDEKIAGRQVVASargedaPQGGQVVDLMAALRASLGKPTAAPREAApparkaagaeagnvtpldaGARKAPKRAArt 299
WP_123043149 217 HLIDSKIAGQVPEVShplastDSSRHLTDFMSAIQRSLADIGQEEPDLS------------------------AKKAK-- 270
WP_013580487 307 akgialvksgkalkaatktakapKRKS 333
AKU95164     310 kkaepr---------kdtekterKKKS 327
WP_012828431 279 -----------------------RRKA 282
WP_013954364 284 sept-------------pirrntKKSA 297
WP_014429952 287 srptatm-------asegkaasaRRSS 306
WP_015436571 279 aepa--------------vrktaKK-- 289
WP_082363387 329 svr----------------kttgRRRP 339
WP_058934661 290 pepqaa----------paprsraRK-- 304
WP_109037570 300 papeaa----------paprsraRK-- 314
WP_123043149 271 -----------------------RSKA 274
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