6S6V,3THO


Conserved Protein Domain Family
SbcD

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COG0420: SbcD 
DNA repair exonuclease SbcCD nuclease subunit [Replication, recombination and repair]
Statistics
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PSSM-Id: 440189
Aligned: 827 rows
Threshold Bit Score: 64.9339
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6S6V_A          1 MRILHTSD-WH-L--GQNf---ySK-SREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPP--SYARTLYNRFVVN- 69  
WP_041271294   11 NGLFLVAD-PH-L--ADTppgqrLD-GYLEQIMSKLTACLDRARELGm-VPVLLGDLFHR--PR--DNSNRMLVE-LIRl 79  
WP_041284680   10 EGILFIGD-PH-V--AASppgyrLD-DYSQSILAKLDFCLQTAREHQl-LPIILGDLFHV--PR--NNPNYLLVA-LMDl 78  
WP_009509254 1086 ftVIALPD-TQyYsgGKNg-------gTPAMFSEQTDWIVSELDALNIRFVLHLGDITDDGD-Sv-PQQWVAASNALYR- 1154
WP_038655185    7 PCLLLMND-LH-I--GK---------ENIPEFIANWNEALTICNKMNVSQIAICGDLFLSR-PSqtLDILLAVHDCL--- 69  
WP_020444935    3 PTVLHVSDtLA-FapDSp--------DEPEVDLGGLANVVRRAIDRDVDAVVHTGNLLRSPEPK--PDTIQAIRSALTT- 70  
WP_012659192    2 TQILHVSD-TH-L--DKRqy--gQD-LRRADFADAFDASVDIAIDEGVDAVIHTGDLFDDPTPS--VPAVNRCLDTIGR- 71  
WP_084568884   33 TKIVHTAD-LH-L--GKSqyq---lpERRMDFFDAFHQIIDGCLRREVDALVITGDIYDHEFPN--DDTVESTIDLVSD- 102 
WP_014488110    2 AKLLISSD-LH-L--SVQ---------EKEYSLSVLDEIIEYAK--DYDALMLLGDTFNTFE-Dl-QELKDIFSK---K- 60  
WP_099509137   14 NGVLVIGD-PH-V--GSRrpgrrKDvVWPQAVLGKLERCVAIANERQl-AVVILGDLFDR--PV--ETDVALKNQ-LIRv 83  
6S6V_A         70 LQ--Q-------TGCHLVVLAGNHDSVAT-LNESR---DIM-------Afl-nT-T--VV-AsagHAP------------ 112 
WP_041271294   80 FGs-Rt------GPGRVWALVGNHDKYQSrLTEDV---TIAv-----lEaa-gVlR--LM-Ke--EGPq----------- 127 
WP_041284680   79 F-----------RPVIPWVLVGNHDKHEArLTPDV---SLMv-----lHaa-rViR--LL-Aa--AGPv----------- 122 
WP_009509254 1155 LE--DpattlleEGLSYSVAVGNHDQYPNg-SADGttyYFNqyfgvhpEt--gVnH--FE-----GKSyyggtripenad 1222
WP_038655185   70 LSaaE-------QGINVSIANGNHDKVS--LEANRgycHIYn------Qhp-nV----LVaDd----------------- 112 
WP_020444935   71 LR--D-------AEIPVYLVAGTRESTGDg-TAIE---EFR-------Dg--dLaH--EL-G---TSP------------ 110 
WP_012659192   72 LE--D-------AGIPFLAIVGNHERKRE-E---Q---WMDi-----iKrfgnA-K--RL-Sk---SP------------ 111 
WP_084568884  103 LG--Skr---dgAfVPVYLIHGDHDHPPG-KRNTPgvdHLI-------Qn---T-HaeRL-G---GHP------------ 149 
WP_014488110   61 ME--D-------YQKDVYLLKGNHENLKA-KGITLs--KLKf-----pEn---V-I--VIeDis---------------- 101 
WP_099509137   84 L---Kg------FHHRPIVNVGNHDIQHTmLTDGD---SLAl-----lGlc-dVvD--VV-Aa--SSPv----------- 129 
6S6V_A        113 ---QILprrdgtPGAVLC-PIPfLRP--RdiitsqaglngiekqqhllaaiTDYY-Q-QHYA-D-AC-KLrgDQ-P-LpI 179 
WP_041271294  128 ---FILet--daGSALVc-ASPd----------------------------GAPLpK-G-FE------RSp-DDpQt--V 162 
WP_041284680  123 ---ATVva--ggRRVLVg-ASPd----------------------------WTPIpR-T-VE------RGg-HDy----V 155 
WP_009509254 1223 dnyTLFs----aSGLDFI-VVS-LEYdtTp--------------------dQEDL-Dw--AD-S-Ll-KA--YP-D-RrA 1266
WP_038655185  113 --yVTLpigd--gryALLhMIAyFPEdgSf---------------------CDKL-S-D-LKrNaL------DG-S-KkN 156 
WP_020444935  111 ---VRI------DDLALY-GVDhVDS-------------------------GDAF-QrE-LA-A-LEpTE-----DyAyN 146 
WP_012659192  112 ---TVVtdangdDPVSVY-GIDaIRS--Pe---------------------WDGY-D-FTLG-E-SE-Sn-----D-HvT 153 
WP_084568884  150 ---TSIs-----DDLVLY-GVH-----------------------------HEDL-S-DLVD-NnLSfSPpp--dD-T-Y 184 
WP_014488110  102 --fFNI------DNLDII-ALPySEKyi----------------------iDNDInK-K-IE-S-L--NA-----D-N-R 137 
WP_099509137  130 ---TEIqv--gsRRIGVg-MTPy----------------------------GQAIpT-D-AR------GSf-SGvDl--H 164 
6S6V_A        180 IAT-GHLTt-----vGAsksdavrD-I---------YIGT---LDAF--PaQNFppaD--YIALGHIHRAQ--Ii----g 230 
WP_041271294  163 VWL-THHNirf------------pefDd--------RAYA---IREL----PGI---D--WIINGHIHRPQ--Ptv--rq 205 
WP_041284680  156 IWV-THHDltf------------pdyTa--------GRVH---LRPI----PGV---D--LVVNGHLHTPK--Ppv--qr 198 
WP_009509254 1267 IIV-THHMvn----tGnpa---------------sfSTLGqaiYNALk-NnPNL---M--LMHGGHIHGEG--Rradtwg 1318
WP_038655185  157 YLY-IHEGi-----nGAlsq-------------psdKELP---ANIF----EEF---E--RVFVAHYHNRC--Vi----- 198 
WP_020444935  147 VIA-CHQGiwppl-------------------deadADVSa--FDAMvaTdvfV---D--DVLAGGSDEPLawEn----d 195 
WP_012659192  154 ILC-MHELv-----qP--------LvPehrgdpydlSEDI---LDRL--N-FLP---T--ALALGDYHSTC--Ndt---- 202 
WP_084568884  185 IALcTHVMlhkynyvGkd------daY---------WPFQl--LKPV--Pf-DV---N--LMLCGELHKRK--Hyp---- 233 
WP_014488110  138 IVI-AHGIv-----eGTlwaie---------eneesASIP---IDII--Kk--I---DpnIAIVGHIHKQM--Evn---- 186 
WP_099509137  165 AWF-THHDiaf------------dggYp--------GAVP---PFAV----EGC---D--LLVNGHIHKTQ--Ksv--la 207 
6S6V_A        231 G----M---EH-VrYCGSPIPLS--FD-ECgk-sKYVHLVTfSn-GkleSvEnl--nVPvT-------QPMavlkgdlas 288 
WP_041271294  206 G----Q---TTw-aNPGNITRLT--FTrRSmvrqpaAAIW--Rp-Gc-vElErw--eVPy--------LPFdavfpdqel 261 
WP_041284680  199 G----E---TLw-cNPGSISRVA--LSsQTpnklpvAAIW--Rp-Gq-tElEtl--pIPh--------RPFhevfpafvd 254 
WP_009509254 1319 GrtvhSilaDyqsdTNGGNGWLR-------------ILHFSpa-nNt-lSvEtyspvLGqYrtg--dsSRFtldidlssg 1381
WP_038655185  199 ----pK---TR-IeYIGSARQHN--FG-EDe--eKGYTVLYnD--G---ShEfvqn---------ranVRYkvidvdgdk 251 
WP_020444935  196 Df---D----YcVtYAGSTNRRHr----EDga-iPTGTLIEaSt-Da-hShEri--pLTaTep----eQEIerlrttldh 255 
WP_012659192  203 ---vdG---VK-VfYPGATERCK--VS-ERg--tPSVYLLNiQd-Ge-lSrKtr--aIs-TagrenvpRPFltvnidfde 265 
WP_084568884  234 ---trRv---D-IfYSGTPARIHrrYR-DYs---PSVFLHEtTq-QsvdStKysv-----------paRPWneitvsvdr 290 
WP_014488110  187 ---ieNi---E-IiYTGSARVWRrtKS-EMg--iRRCLAID-SanNs-iK-Ktf-inIKnAgv----yRVYesniynisn 248 
WP_099509137  208 G----R---TRw-mNPGTITRQS--V--DLvdhvprAWILD-Eg-Ga-lEpQal--pFEs--------NVFdltgrvvda 262 
6S6V_A        289 itaqleqwrdvsqeppvwldieittdeylhdiqrkiqalteslpv---evllvrrsreqrervlasqqretlselsveev 365 
WP_041271294  262 ppevqetegqsnfikglerlaw-------------------------------------------------krtfegmgl 292 
WP_041284680  255 respspddldesrfikglenlm------------------------------------------------mrktseglgl 286 
WP_009509254 1382 lgnyeeiatrtgiapgdtvtipwedlrpgtryewyvevsdgstti---aspvrgfstqalpeppviriinpannasfvsp 1458
WP_038655185  252 vdirltdlldemkeggryrtkvrvhttpeksasinksilleagaskveiiteaveqievassslfekfdtgkiretyeef 331 
WP_020444935  256 qpadlesadvetladlyglaararelfdqrrreireelldrvhedmriqgtyaavtrttsqrrvtkpqrevfealrqagv 335 
WP_012659192  266 thsldhaatridedaggmnddisdmvvvarltganvgvtakdvydlmaerevavpyvddkrqpdvdfdfdfddeqtesqn 345 
WP_084568884  291 nddidavlsrvveelniqnmerrmilevt-----------------------------------ldgendnftqgdirsq 335 
WP_014488110  249 ieqkasewdindiidiniygiaedeneldekinniknkyskyv------rdfniktsdifllenaynesiikeflsiade 322 
WP_099509137  263 adgsvvarevesafvtllqaesate------------------------------------------lkrsgdgsiirde 300 
6S6V_A        366 fnrrlaleeldesqqqrlqhlF 387 
WP_041271294  293 rqflqenlsretpegaliwelY 314 
WP_041284680  287 qtfltanlqsgdpidaliwelY 308 
WP_009509254 1459 aeitleadatdadgtvakvefF 1480
WP_038655185  332 cqekqiddvelglsylskl--- 350 
WP_020444935  336 npyevleldssalrelseagrV 357 
WP_012659192  346 pdkmlddavggleistittead 367 
WP_084568884  336 lekwpgvlrasvnatspdqgwI 357 
WP_014488110  323 yefnsnneedleivelakrigI 344 
WP_099509137  301 ieakfaadetsdavraivrslL 322 
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