1VS5


Conserved Protein Domain Family
rpsC_bact

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TIGR01009: rpsC_bact 
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ribosomal protein S3, bacterial type
This model describes the bacterial type of ribosomal protein S3. Chloroplast and mitochondrial forms have large, variable inserts between conserved N-terminal and C-terminal domains. This model recognizes all bacterial forms and many chloroplast forms above the trusted cutoff score. TIGRFAMs model TIGR01008 describes S3 of the eukaryotic cytosol and of the archaea. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Statistics
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PSSM-Id: 130082
Aligned: 16 rows
Threshold Bit Score: 291.143
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1VS5_C         1 MGQKVHPNGIRLG--IVKPWNSTWFANT-KEFADNLDSDFKVRQYLTKELA--KASVSRIVIERPAKS-IRVTIHTARPG 74  Salmonella ente...
Q9ZCR1         1 MGQKVCAHGFRVGptLIKDWDSILYA-E-KHYKTLFIQDLKIRDLINKWFN--QAQISRVLIERPSNKsIIININAKKPN 76  Rickettsia prow...
O66437         1 MGQKTHPIGFRLG--VIKEWPSKWYAPK-KEYSKLLHEDLKIKNYIKERYK--VAGVSKVEIERIVDK-VRVKIHTARPA 74  Aquifex aeolicu...
P94273         1 MGQKVHPYSLRVK--INKDWKSKWYFDK-KLYSAILHEDFLIRREIMKFLKgiKFDISDIEIIRNNPQkVTVVIVTPRPG 77  Borrelia burgdo...
O83225         1 MGQKVSPIGLRLG--INKVWSSRWYAGP-REYAALLHEDLRIRSMIRSFPEckNADIAEVEIVR-HPQrVTVVMHTARPG 76  Treponema palli...
BAA08837       1 MGQKVNPVGLRIG--VIRDWESKWYAG--KDYADFLHEDLKIREYISKRLS--DASVSKVEIERAANR-VNITIHTAKPG 73  Bacillus subtil...
EUA07187       1 MGQKINPHGFRLG--ITTDWKSRWYAD--KQYAEYVKEDVAIRRLLSSGLE--RAGIADVEIERTRDR-VRVDIHTARPG 73  Mycobacterium x...
WP_010874528   1 MGQKVNSNGLRFG--INKNWISRWTANShAQTAKWLIEDEKIRNLFFVNYR--NAQVSNVEIERTQAT-VDVFVYAAQPA 75  Mycoplasma pneu...
WP_009885841   1 MGQKVNSNGLRFG--INKNWISRWTASSnQQTATWLVQDEKIRNLFFINYR--NAQVSNVEIERTQTT-VDVYVYAAQPA 75  Mycoplasma geni...
AIE75051       1 MGQKIHPVGFRLG--ITKDHKSCWYADP-KRYPELLQEDHKIRQYIEKTLN--NAGISDIRIERKAEQ-IELGIHTARPG 74  Synechocystis s...
1VS5_C        75 IVIGKKGEDVEKLRKVVADIAG--V--PA--QINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRL-GAK 147 Salmonella ente...
Q9ZCR1        77 IIIGKNGTEIDKLKKAIENMTFl-K--EV--YINIHEVRKFNIDAAIVAQTIAAQLEKRVSFRKAMKTAIQASFKQ-GGQ 150 Rickettsia prow...
O66437        75 IVIGRRGQEVENLKKTLEKMLPg-K--EI--TISVVEVRVPELDAQLVAQDIATQIERRVSHRRAMKRAIDNALKA-GAK 148 Aquifex aeolicu...
P94273        78 SVIGLKGSNLEKIGQLLTKKIS--K--KI--SIKIKEVKRPELDAQIIANGIAKQVENRASYRKVLKSSLSTSMLK-GAQ 150 Borrelia burgdo...
O83225        77 VVIGAKGVNIEKIGAEVQKRLN--K--KV--QIKVKEIKRMELNAYLVAQNVARQLTARVSFRKCLRQACAGTMKS-GAQ 149 Treponema palli...
BAA08837      74 MVIGKGGSEVEALRKALNSLTG--K--RV--HINILEIKRADLDAQLVADNIARQLENRVSFRRAQKQQIQRTMRA-GAQ 146 Bacillus subtil...
EUA07187      74 IVIGRRGTEADRIRADLEKLTG--K--QV--QLNILEVKNPESQAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQpNVK 147 Mycobacterium x...
WP_010874528  76 FLIGSENKNIQKITKQIKQIIG--RttNL--DLTINEIGSPMLSARIIARDLANAIEARVPLRTAMRQSLIKVLKA-GAN 150 Mycoplasma pneu...
WP_009885841  76 LLIGSENKNIQKITKMIQIIVG--R--KIklDLTINEIGSPMLSSRIIARDIANAIENRVPLRSAMRQALTKVLKA-GAN 150 Mycoplasma geni...
AIE75051      75 VVVGRGGSGIEQLREGLQKLLGsaR--QI--RVNVIEVPNADADAALMAEYIGQQLERRVSFRRVVRQALQRAERA-EVK 149 Synechocystis s...
1VS5_C       148 GIKVEVSGRLGGAEIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWIFKGEILGGM 211 Salmonella enterica subsp. ente...
Q9ZCR1       151 GIRVSCSGRLGGAEIARTEWYIEGRMPLHTLRADIDYSTAEAITTYGVIGVKVWIYKGEYKENK 214 Rickettsia prowazekii str. Madr...
O66437       149 GVKVQVKGRIGGAELARKEWFLVGRMPLQTLRADIDYGFATAYTKYGILSVKVWIYKGDVLNGR 212 Aquifex aeolicus VF5
P94273       151 GLKIKIAGRLGGAEIARSFEVKEGRVPLHTLRANIDYGFSEAQTTYGIIGVKVWLFKGEVLGRQ 214 Borrelia burgdorferi B31
O83225       150 GVKIRVSGRLGGAEMSRTEEIKEGRTPLHTLRADIDYGFAEAHTTYGSIGVKVWLYSGMMYGNE 213 Treponema pallidum subsp. palli...
BAA08837     147 GVKTMVSGRLGGADIARPEYYSEGTVPLHTLRADIDYATSEADTTYGKLGVKVWIYRGEVLPTK 210 Bacillus subtilis subsp. subtil...
EUA07187     148 GIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKVWIYKGDIVGGK 211 Mycobacterium xenopi 4042
WP_010874528 151 GIKVLVSGRLNGAEIARDKMYIEGNMPLSTLRADIDYALEKAQTTYGVIGVKVWINRGMIYTKG 214 Mycoplasma pneumoniae
WP_009885841 151 GIKVLVSGRLNGAEIARDKMYIEGNMPLSTLRADIDYAFEKAKTTYGIIGVKVWINRGMIYAKG 214 Mycoplasma genitalium
AIE75051     150 GIKIQVSGRLNGAEIARTEWVREGRVPLHTLRADIDYAYRTALTTYGILGIKVWIFKGEVIPGQ 213 Synechocystis sp. PCC 6714
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