Conserved Protein Domain Family
Ribosomal_P0_like

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cd05796: Ribosomal_P0_like 
Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). Some eukaryotic P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Statistics
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PSSM-Id: 240222
Aligned: 34 rows
Threshold Bit Score: 178.155
Created: 7-Nov-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
23S rRNAputative
Feature 1:23S rRNA interface [nucleic acid binding site]
Evidence:
  • Comment:Based on the binding of Haloarcula marismortui L10 ribosomal protein with 23S rRNA at a kink-turn site.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          ##  #                                                 ####  #                 
BAB55205      21 ELKQNLIEELRKCVDTY-------KYLFIFSVANMRNSKLKDIRNAWKHS-RMFFGKNKVMMVALGRSPsDEYKD-NLHQ 91  human
CAL57796      21 EWKSSIIDRARDALELR-------ASAYVFKYTCMRNGTFKEMRQACEETtTFFVGSNAVLRVALGKDSeSESKE-NASE 92  Ostreococcus tauri
XP_651623     14 EIKNRLITNIQEAAQKY-------STVFIFYTPVLRSKFMNIIRKDWRDS-IFFFGSNKVMQVALGRTEqDEIKP-GYHF 84  Entamoeba histo...
XP_668580     21 KDKSEIIENVHEYIGKF-------KFIYVVKLKNQRNAALKQLRVRLEPG-KLLVGKNKLLQVAFGADSdSESAK-NAHK 91  Cryptosporidium...
XP_823223     21 EEKDELINKIRDALDDY-------TDVYTFELSNIRTNILQQIREERRNDsRLFLGNNKLLMIALGRDDsSSQRP-NLHK 92  Trypanosoma bru...
AAX27652      15 PKKKQDVAKVRQYLDEY-------KRVYVVTLHNPRTQKVSEIRKNMPDI-KLLFGINKVTVWALGKTHkDSYRP-KLHH 85  Schistosoma jap...
XP_953752     20 KKKIKLVENIRETLENFikkndnsTFVYLISLNNQRNSPLKTLRSLLLPG-RVFYGKNKVMRIAFGTKPeDEIHD-NIHK 97  Theileria annul...
ABA95602     158 ERKGKVVTDIKDAVEHY-------ANAYVFTYDNMRNQKLKDLREQLKSSsRIFLAGKKVMQIALGRSPaDEAKT-GLHK 229 Japanese rice
XP_001329001  16 EEKVQRGEAIREAVTKF-------DRIYVLRFSSESTEPQTALRRNFRSS-NLCRDKKTIISHSIGATPeTEARP-GLSG 86  Trichomonas vag...
XP_001443882  21 EKKELLVKKLKQSLKKY-------QRAIVFQYKNLSTNPLKEIQQAWKADsKLFIGKNKVMQVGLGRNE-EQSATkNSYL 92  Paramecium tetr...
Feature 1                                                                                        
BAB55205      92 VSKRLRGEVGLLFTNRTKEEVNEWFTKYTEMdYARAGNKa-AFTVSLDpg-----pLEQFPHSMEPQLRQLGLPTALKRG 165 human
CAL57796      93 LGKRVRGDCGVMFTDLSKEDVEATFDRFAVSdYARTGQVa-GETVTVPagpvrgpsGALMEHTLEPTLRKNGMPTRLNRG 171 Ostreococcus tauri
XP_651623     85 IAERLKGTCGLCFTNKKKEEILAYFKTQIHDdFARSGSIa-TMDFVVPe------gPLPFEGSLELHLRKNLLPVELKDG 157 Entamoeba histo...
XP_668580     92 ISSFLRGERGLIFTDLAPSNLNKVLEESSTMeFGREGSLsdITCVVEPnt-----eLECLYKNAEFYMRKQFPQLKPTLF 166 Cryptosporidium...
XP_823223     93 LSKYLTGSCGLLFTNLPHQDVKEYFKGVSADvFARTGQVa-TCPLLLRtg-----pLAQFPHSMFDHLSRLGLPIKLDKG 166 Trypanosoma bru...
AAX27652      86 LCKYLKGQCALLFTKSSPSELREQLDAFRSAeYCRPGAPa-EQTVRIAsg-----pLPKFPHTMEPVLRQLGMPVKLVRG 159 Schistosoma jap...
XP_953752     98 ISKNINGETAVLITSEDPEVVIKKVKEYKVRdFSKAGNIa-TDTIVLKvdg---keFDEIPGSMEPQFRQLGMPTALNMG 173 Theileria annul...
ABA95602     230 LSKFLQGDTGLFFTNLPRDDVERLFREFEEHdFARTGSIa-TETVELKeg-----pLEQFTHEMEPFLRKQGMPVRLNKG 303 Japanese rice
XP_001329001  87 LLQYLAGNTGLFMTNEDDNTVREYLQSMTQPeFAKAGFIa-TEDFTVPeg-----pLPQFTFSMDGYLRELGLPVQLENG 160 Trichomonas vag...
XP_001443882  93 LSPFLKGETGLLLTNKTLQEIQEYCDTYKIPeFARAGHIs-DQTIVLKegi---dtLKGFAHSIEPYLRKLGLNTQLINQ 168 Paramecium tetr...
Feature 1                          
BAB55205     166 vvTLLSDYEVCKEGDVLT 183 human
CAL57796     172 viELEADHVLCRQGQHIS 189 Ostreococcus tauri
XP_651623    158 ilSCKEEYVVCRKGQKLS 175 Entamoeba histolytica HM-1:IMSS
XP_668580    167 g-SDQGKVIICEKGNPLN 183 Cryptosporidium hominis TU502
XP_823223    167 viVLLRDTTVCEVGDTLT 184 Trypanosoma brucei TREU927
AAX27652     160 vvHLERDYLVCNSEDVLS 177 Schistosoma japonicum
XP_953752    174 kiILMGDFTLCEKDKPLT 191 Theileria annulata strain Ankara
ABA95602     304 avELVADHIVCEEGKPIS 321 Japanese rice
XP_001329001 161 tiFNVRDHKVCTAGEPLT 178 Trichomonas vaginalis G3
XP_001443882 169 qiVLNEKFILTQEGKPLT 186 Paramecium tetraurelia strain d4-2

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