1RLO,1RLM,3L7Y,1RLT,2HF2,3DAO,2B30


Conserved Protein Domain Family
HAD_YbiV-Like

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cd07518: HAD_YbiV-Like 
Click on image for an interactive view with Cn3D
Escherichia coli YbiV sugar phosphatase/phosphotransferase and related proteins; belongs to the haloacid dehalogenase-like superfamily
Escherichia coli YbiV can act as both a sugar phosphatase and as a phosphotransferase. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Statistics
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PSSM-Id: 319820
Aligned: 29 rows
Threshold Bit Score: 160.827
Created: 12-Mar-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:based on Escherichia coli sugar phosphatase YbiV, and on other haloacid dehalogenase (HAD) superfamily members with structure
  • Structure:1RLM: Escherichia coli sugar phosphatase YbiV, binds glycerol and Mg2+ in the active site
  • Structure:1RLT: Escherichia coli sugar phosphatase binds aluminum fluoride and Mg2+ in the active site
  • Structure:3DAO: Eubacterium rectale putative phosphatase (Eubrec_1417) binds PEG400 in the active site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #####                               ###                     #              
1RLO_A         4 KVIVTXMDGTFLndaktynqprFMAQYQELKKrg-iKFVVASGNQYYQLISFFpel-kdeISFVAENGALVYehgkqlfh 81  Escherichia coli
1RLM_A         4 KVIVTDMDGTFLndakt-ynqpRFMAQYQELKkrgiKFVVASGNQYYQLISFFpel-kdeISFVAENGALVYehgkqlfh 81  Escherichia coli
YP_207105      7 KFIAADMDGTLLnehse-ldpsFFDLYQQLEDkn-iIFAAASGRQYYSLLETFepv-kdrMMFIAENGTLVMypgeelys 83  Vibrio fischeri...
YP_001387083   3 KFIATDLDGTLVnsegk-iynkVFNLINDLHKng-vKFAAASGRFYSQLNENFnsv-kedMILIAHNGALIKyskngqtl 79  Clostridium bot...
NP_600146      4 RLVATDMDGTLLnthhe-vpekFWDILEQMRAkg-iAFAPASGRQLATLQKQFgha-gepISYIAENGTVVVhdgeiisl 80  Corynebacterium...
YP_004889658   4 AIIATDLDGTFLrddhqfdhhrFQAQLDQMNAqg-qHFVVASGNQLQHCIDVFdgi-ngeLTYVAENGGLVIdnhgnvla 81  Lactobacillus p...
YP_003028511   4 KIYASDMDGTFLredhsfdkerFRRILNQFKEkg-yLFVAASGRSMQSLKLVFedf-vdeIGFVAENGSIVEyqgqtifm 81  Streptococcus s...
YP_003028004   4 RLIATDMDGTFLdgqgnfdrerFSRVLDQLDQkk-iPFVIASGNGIGRLLQLCqgf-edrLIFVADNGAHVYqngktvir 81  Streptococcus s...
NP_347161      3 KLIATDMDGTLLrsnge-fpneFPLILDSLLNkn-iMFSVASGRQYFTLKDNMagf-edkITFIAENGAFIVkdgkelfa 79  Clostridium ace...
YP_004888795   4 NLIATDLNGTLLhqdqrfdkerFKRVLAQLRAin-vSLVLSSGNQYAHLRQLFkdvmadnLIVVAENGASIYaqdrlifd 82  Lactobacillus p...
Feature 1                                                                                     # #
1RLO_A        82 geltrhesrivigellkdkqlnfvacglq-----------sayvsenapeafvalmakhyhrlkpvkdyqeiddvlFKFS 150 Escherichia coli
1RLM_A        82 geltrhesrivigellkdkqlnfvacglq-----------sayvsenapeafvalmakhyhrlkpvkdyqeiddvlFKFS 150 Escherichia coli
YP_207105     84 csmdtpsviniiktaraiegthivlcgkrsayi--etqdpkalaefskyyqrceyvedllavddefikvaichfdgTEEF 161 Vibrio fischeri...
YP_001387083  80 yanyidkeyiksveklkrnfgeelilage-----------neafvvnpsqsikeefnfynvpyieyksfdevdkpvQKIS 148 Clostridium bot...
NP_600146     81 ttidsdtvhsiidavrasdidmgvvvcrp----------erayverndeafraeglkyyvsieevqdlheavnnevIKVA 150 Corynebacterium...
YP_004889658  82 esliepalyqelliyvatepalagaeisv----------sgkqgayirpqddspimryylsrlqvvpslsaiddhiYKAT 151 Lactobacillus p...
YP_003028511  82 ddpispeiylpiiagidagpfgssrsmvlsgle---nfyllknaepqfleamtnyyahfrlvdtfeevreeiikinAKFS 158 Streptococcus s...
YP_003028004  82 raiqqveveailhffkgrwadvclmlsndgniymqagagmpfagtdlpielaqmaafqnrvtyldnlsaypvsesiHKVG 161 Streptococcus s...
NP_347161     80 ktldrdmlskvvddakkvpdcklvlcgk------------ksayvldkssafieevekyyhksavvnsldeiddefFKIA 147 Clostridium ace...
YP_004888795  83 gslsadqqrkfvtvdrhqplfkdayvilvg--------shgsytelgapdklvamarqfydhlhlvadlatvddtvKKIS 154 Lactobacillus p...
Feature 1                                         #       #                     ### ##           
1RLO_A       151 LNlpdeqiplvidklhvaldgimkpvtsgfgfIDLIipglhKANGISRLLKrwdlspqnVVAIGDSGNDAEMLKMarYSF 230 Escherichia coli
1RLM_A       151 LNlpdeqiplvidklhvaldgimkpvtsgfgfIDLIipglhKANGISRLLKrwdlspqnVVAIGDSGNDAEMLKMarYSF 230 Escherichia coli
YP_207105    162 VFpsfdanfges----------hqvvvsakiwLDVMnvvasKGAAIKHLQNtldfsfeeTMSFGDYLNDLEMLQEsyYSY 231 Vibrio fischeri...
YP_001387083 149 YYvkdgikasmidylkenlnknlqfvasgdkwIDMMnkevsKGHAIKILQKkfniekdnTMVFGDYYNDITMFKQayYSY 228 Clostridium bot...
NP_600146    151 IFtfqdaekdcapiira-aspnanvvvsgqhwVDVMdpsanKGQALAALRDalgleesqTLVFGDYLNDTELIKAagKSY 229 Corynebacterium...
YP_004889658 152 FSwqatdadahaalinqqfagrlratvsggngLDVIpphvnKATGLAYLQQhwhvapsqTAAFGDNGNDLEMLREadYSF 231 Lactobacillus p...
YP_003028511 159 PEemddarrwlndtf-----egvtamttgfdnIDIIpngsnKSVGLSHLCAhfgitrqdVVAFGDNQNDLDMFDFagLAL 233 Streptococcus s...
YP_003028004 162 LWvpearvesiteafnqgfhgqlvavtsgygsVDILpqgihKAWGLEQVLTgldiepeqVMAFGDSDNDIELLSYvgYSY 241 Streptococcus s...
NP_347161    148 ICdykgsannsnvllspkwgklfqltvsgdiwLDIGrndvnKGTAIKFLQDkfnineneTMAFGDYYNDVSMLQSvyHSY 227 Clostridium ace...
YP_004888795 155 IStspdqaadlvarandyfdgelrahdsgygvVDLVdqrvgKLPAIQFLATklgltaanVMAFGDGANDVPLLRYaaHSY 234 Lactobacillus p...
Feature 1                                        
1RLO_A       231 AMGNAaeNIKQIAr-YATDDN-NHEGALNVIQ 260 Escherichia coli
1RLM_A       231 AMGNAaeNIKQIAr-YATDDN-NHEGALNVIQ 260 Escherichia coli
YP_207105    232 AMENAhqKVKETAr-FMAPSN-KDAGVFTVIK 261 Vibrio fischeri ES114
YP_001387083 229 AMENApeDVKEKA--NFIAGNnNENAVYKTIS 258 Clostridium botulinum A str. Hall
NP_600146    230 AMSNAhpDILELA--DEIAPSnIEEGVIVVLE 259 Corynebacterium glutamicum ATCC 13032
YP_004889658 232 AMQNAiaPVKEMAtyLTSHDN-NHDGVLATID 262 Lactobacillus plantarum WCFS1
YP_003028511 234 ATENAreEVKAQAd-WMIGHC-NDGAVLAYLE 263 Streptococcus suis BM407
YP_003028004 242 AMENAtdKVKAVAk-YMAPSH-LEAGVLQVIE 271 Streptococcus suis BM407
NP_347161    228 VMENApdGVKKHGr-FIAKSN-DESGVIQVIK 257 Clostridium acetobutylicum ATCC 824
YP_004888795 235 AMCNApaDIQAAAkhVTALDN-EHDGVLATIE 265 Lactobacillus plantarum WCFS1

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