2WP8,2NN6


Conserved Protein Domain Family
RNase_PH_RRP45

?
cd11368: RNase_PH_RRP45 
Click on image for an interactive view with Cn3D
RRP45 subunit of eukaryotic exosome
The RRP45 subunit of eukaryotic exosome is a member of the RNase_PH family, named after the bacterial Ribonuclease PH, a 3'-5' exoribonuclease. Structurally all members of this family form hexameric rings (trimers of Rrp41-Rrp45, Rrp46-Rrp43, and Mtr3-Rrp42 dimers). The eukaryotic exosome core is composed of six individually encoded RNase PH-like subunits and three additional proteins (Rrp4, Csl4 and Rrp40) that form a stable cap and contain RNA-binding domains. The RNase PH-like subunits are no longer phosphorolytic enzymes, the exosome directly associates with Rrp44 and Rrp6, hydrolytic exoribonucleases related to bacterial RNase II/R and RNase D. The exosome plays an important role in RNA turnover. It plays a crucial role in the maturation of stable RNA species such as rRNA, snRNA and snoRNA, quality control of mRNA, and the degradation of RNA processing by-products and non-coding transcripts.
Statistics
?
PSSM-Id: 206773
Aligned: 63 rows
Threshold Bit Score: 257.456
Created: 20-Oct-2011
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 33 residues -Click on image for an interactive view with Cn3D
Feature 1:hexamer interface [polypeptide binding site]
Evidence:
  • Structure:2NN6; human exosome hexamer, contacts at 4A

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                      # #              # ###            
2WP8_A         7 ISASESKFILEALRQn----------YRLDGRSFDQFRDVEITFG-KEFGDVSVKMGnTKVHCRISCQiAQPYEdrpfEG 75  Saccharomyces c...
CBZ27123      14 LVQRNLEFTRTAWKAg----------LRPDQREANQLRVVEMDFPlLSRDVVQVKCGnTVATATVSCDlVEPSPyrpkHG 83  Leishmania mexi...
CAC39260      15 LTQREVEFTKSAWLAg----------LRPDQRTAQQMREVSVEFPlLSRDVVVVRCGgSVVTAAIATAlVEPTPqrpkHG 84  Trypanosoma brucei
EFZ32975      16 LTQREVEFTKSAWIAg----------LRPDQRGAQQLREVNVDFPlLSRDVSCVRCGgTIVTAAIACElVEPFPyrpkHG 85  Trypanosoma cruzi
CBQ70379       9 PSVTESEFTLSCLQSg----------VRVDGRSFLSARDIDISFG-EELGNVSVTIKgTRVSTSVKATlIPPRSdrpyEG 77  Sporisorium rei...
XP_002785952   3 LTLSDEAFAYSAIFPeasekststvgLRADGRTLLDCRRMKLRLG-PALGQCECRIGsTWVRAVVTGEvITPPPerpnEG 81  Perkinsus marin...
XP_569460      7 PPSVQNEFLLAALAEg----------KRLDGRLPLQMRDVHYIFG-DELGCVECRLGkTAILAQVSATiVKPRDdrpyEG 75  Cryptococcus ne...
EGG10912       7 ASIPEREFLLDALREg----------LRLDGRATFEQRPISLLIS-EDGDSVECSLGrTRVSAHVSATiTRPRPdrpfEG 75  Melampsora lari...
XP_001731500   9 PSITEHDFVESALRTt---------aLRPDGRRFFQSRPVQVNFS-ERLGWCQVQLGdTIAVASVEAAlSEPRRdrpyEG 78  Malassezia glob...
2NN6_A        23 LSNCERRFLLRAIEEk----------KRLDGRQTYDYRNIRISFG-TDYGCCIVELGkTRVLGQVSCElVSPKLnratEG 91  human
Feature 1          # #    #                         #  #   #                     #    #    #     
2WP8_A        76 LFVISTEISPmagsqf--------engnitGEDEVLCSRIIEKSVRRSgalDVEGLCIVAGSKCWAVRADVHFLDCDGGF 147 Saccharomyces c...
CBZ27123      84 FFEVHARQLLherd------------pldqLKEIKRISMYLTRLLSGSv-lETEGLCVIPGRRVWSIDAEVIIVNNDGNV 150 Leishmania mexi...
CAC39260      85 LLHFSVRRLHtekds-----------paadGSTQKNLVAFLERLVRTGgviDTAGLCVLPGQKVWSLTVNVTIMNDEGNC 153 Trypanosoma brucei
EFZ32975      86 IIDFSVRQPYterd------------ssakTAELKKLTAFLERLIKGGgvvDTEGLCVLPGRRVWSISVDVTVLNDEGNV 153 Trypanosoma cruzi
CBQ70379      78 FLQITTDISPmagieydtt---ggganssaRAREVLFERLIEKAVRRTeavDREALCVVAGEQVWNVHLSVHLLSDTGAA 154 Sporisorium rei...
XP_002785952  82 KLFVSVDYGAvvssatlpsgdsaglpgtaqTPEAVSLCNQLERMLKGSkavDVEALCIAGGSRVWSVRLDVHVFTDAGNV 161 Perkinsus marin...
XP_569460     76 FLLINSEIGPmassvy---------engrpGDDEVMIGRLLEKSIRRTeaiDREALCILAGEKVWQLRLTLHFLSDSGNL 146 Cryptococcus ne...
EGG10912      76 LLQVSAEINPlasfvy---------eigraSEDEVHLSRLLDKTLVRSgviDREALCILAGQKVWCIRVDLHFLNDEGNM 146 Melampsora lari...
XP_001731500  79 LVQIHADISPmagveydsg---gmfgasesRERAALFERLLERAVRNTeavDREALCVIAGKVVWCVSLTVHLLADQGAS 155 Malassezia glob...
2NN6_A        92 ILFFNLELSQmaapaf---------epgrqSDLLVKLNRLMERCLRNSkciDTESLCVVAGEKVWQIRVDLHLLNHDGNI 162 human
Feature 1                    ###                              #                                  
2WP8_A       148 IDASCIAVMAGLMHFkkpditvhgeqiiv-hpvnerepvplgilHIPICVTFSFFnpqdteen----------------- 209 Saccharomyces c...
CBZ27123     151 QDVAQWAVMAALQHVrrpeltirgedvvv-hppherdpvplplhHIPLSFTFAVCanpqevqlavraatlrraqgsrgg- 228 Leishmania mexi...
CAC39260     154 NDAAVWAVIALLMHHrrpeltvrgssviv-hppherepvplsvqHTPLPFTFAITmapterekalnhqralsatgsssgp 232 Trypanosoma brucei
EFZ32975     154 TDVAVWATVAVLLHYrrpeltirgdsvil-hptherdpvplsihHTPLSFSFAITmapgdrnkla--------------- 217 Trypanosoma cruzi
CBQ70379     155 LDAAVLCSMLSLRHFrrpdyaidngthvhlfstdervpvplaihHTPLCVTFAIFnnlpaasstktdkd----------- 223 Sporisorium rei...
XP_002785952 162 GDAAATASVAALMHYrrsevttmegstv---vreelepmplsihHMPLPLTFTLVkspd--------------------- 217 Perkinsus marin...
XP_569460    147 LDCAALAGMAALKHFrkpdvevigdevii-hspeerapvplaihHTPLCLTFAYFe------------------------ 201 Cryptococcus ne...
EGG10912     147 LDCASVAAIAALQNFrrpditlvgeeitv-hsfderlpipltlhHLPICLTFAFFel----------------------- 202 Melampsora lari...
XP_001731500 156 VDAAVLASMLALRQYrrpevtvengvvtv-hssdervpvplachHVPLCVSYAVFllepkteqehallqaqslavt---- 230 Malassezia glob...
2NN6_A       163 IDAASIAAIVALCHFrrpdvsvqgdevtl-ytpeerdpvplsihHMPICVSFAFFqq----------------------- 218 human
Feature 1                                                              ############    #   #     
2WP8_A       210 ------------------ikgetnsEISIIDATLKEEll-rDGVLTVTLNKnrEVVQVSKAGGLPMdaltLMKCCHEAYS 270 Saccharomyces c...
CBZ27123     229 --apsganadegdgeakdlgwssdaLQVVVDPSLEEAaa-aACTVSVAVNGegYVCSLEKADGCDVsiayLGQCMETATK 305 Leishmania mexi...
CAC39260     233 qpssgvgnsidtasafaidgtspqpLGVVVDPTTAESla-aASSIVVAINAegQVCTVVKAEGCSIhlkdLNACIEAAGT 311 Trypanosoma brucei
EFZ32975     218 ----------------rgrrdsqeaLEVVVDPTFAEAta-aSSSVVVAVNAegQVCSVSKSEGSCIhlneVNHCMETAFL 280 Trypanosoma cruzi
CBQ70379     224 -----------slidpssssfapasTAALLDPTLLEEsl-aTSKLTLVLNAqrEICVLDKSYGSPIqpqlLLDLIQVGLN 291 Sporisorium rei...
XP_002785952 218 ----------------------gttSAVLADPTSLEErlsgGALLVVVVNQygELCSLLKPGGTSCplptVINCIHAAAG 275 Perkinsus marin...
XP_569460    202 ------------------------nLPPILDPSHVEMml-cSGTLTLTLNAqrEICVLSKAGGAPLgaeeIMGVVKVGVD 256 Cryptococcus ne...
EGG10912     203 -----------------------paSYILLDPSRLEQql-sTGTMTLTLNAqrEICVINKSGGMPSdveeIMRVVRIGSR 258 Melampsora lari...
XP_001731500 231 ----arqqqqlamqvddapanaiavPVTLLDPSLLEKtl-aHSTITFVMNAqrEICVLDKAGGASLpfqtILALLDSAAA 305 Malassezia glob...
2NN6_A       219 ------------------------gTYLLVDPNEREErv-mDGLLVIAMNKhrEICTIQSSGGIMLlkdqVLRCSKIAGV 273 human
Feature 1                
2WP8_A       271 IIEKITDQ 278 Saccharomyces cerevisiae S288c
CBZ27123     306 LTQALLMQ 313 Leishmania mexicana MHOM/GT/2001/U1103
CAC39260     312 LAPRVLDL 319 Trypanosoma brucei
EFZ32975     281 LAPHILSL 288 Trypanosoma cruzi
CBQ70379     292 RVQQLTQT 299 Sporisorium reilianum SRZ2
XP_002785952 276 RAKEVHKM 283 Perkinsus marinus ATCC 50983
XP_569460    257 KVRELVRH 264 Cryptococcus neoformans var. neoformans JEC21
EGG10912     259 RVQEVDAL 266 Melampsora larici-populina 98AG31
XP_001731500 306 RVQELSTL 313 Malassezia globosa CBS 7966
2NN6_A       274 KVAEITEL 281 human

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap