Conserved Protein Domain Family
Ycf1

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pfam05758: Ycf1 
Ycf1
The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene.
Statistics
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PSSM-Id: 368599
Aligned: 5 rows
Threshold Bit Score: 1375.37
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
YP_005090236   22 VVVVGLYYGFLTTFSMGPSYLFLLRARVIEEGEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYL 101 
Q0ZIW0         22 VVVVGLYYGFLTTFSIGPSYLFLLRAQVMEEGEEGTEKKVSAITGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYL 101  wine grape
Q2VEC3         22 VVVVGLYYGFLTTFSIGPSYLFLLRALVM---EEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYL 98   potato
P56785         23 VVVVGLYYGFLTTFSIGPSYLFLLRARVMDEGEEGTEKKVSATTGFIAGQLMMFISIYYAPLHLALGRPHTITVLALPYL 102  thale cress
Q2PMP0         22 IVVVGLYYGFLTTFSIGPSYLFLLRARLV---EEGTEKKISATTGFITGQLIMFISIYYAPLHLALGRPHIITVIALPYL 98   soybean
YP_005090236  102 LFHFFWNNHKHFFDYGATTRNSMRNLSIQFVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNKMLFVTSSFVGWLIGH 181 
Q0ZIW0        102 LFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLLNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGH 181  wine grape
Q2VEC3         99 LFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYLFRCNNKILFVTSGFVGWLIGH 178  potato
P56785        103 LFHFFWNNHKHFFDYGSTTRNEMRNLRIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGH 182  thale cress
Q2PMP0         99 LFQFFGNNHKNFLNYGYKNPNSIRNFSIQRIFFHNLIFQLLNPFFLPSSILIRLVNIYLFRCNNKFIFLISSFIGWIIGH 178  soybean
YP_005090236  182 ILFMKWVGLILVWIQQNNSIRSNVLFRSNKY--LVSELRNSMARIFSILLFITCVYSLGRIPSPIFTKKLKETSETEERE 259 
Q0ZIW0        182 ILFMKWVGLVLVWIRQNPSIRSNVLIRSNKY--LVSELRNSMARIFSILLFITCVYYLGRIPSPILTKKMKETSETEERG 259  wine grape
Q2VEC3        179 ILFMKWLGLVLVWIRQNHSIRSNKYIRSNKY--LVLELRNSMARIFSILLFITCVYYLGRIPSPILTKKLKEASKTEERV 256  potato
P56785        183 ILFMKWVGLVLVWIQQNNSIRSNVVIRSNKYkfLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTKKLKGTSET---- 258  thale cress
Q2PMP0        179 TFFMKWIEFILVRIQQTNSIKSNVRIQSNKY--IMSEFRNSMLKIFLVFLFITCLYYLGRVPPPFFSKKLSEIQETHEIY 256  soybean
YP_005090236  260 ESEEETDVEIETTSETKGTKQ---GSTEED--PSSSLFSEEKEDRDKIDETEEIQVNGKEKTKDEfhFHFNETCY----- 329 
Q0ZIW0        260 ESEEETDVEIERTSETKGTKQeqeRSTEED--PSPSLFSEEKEDPDKIDETEEIRVNGKEKTKDE--FHFKETCY----- 330  wine grape
Q2VEC3        257 ESEEERDVEIETASEMKGTKQeqeGSTEEDpyPSPSLFSEEGWDPDKIDETEEIRVNGKDKIKDKfhSHLTETGYnnint 336  potato
P56785        259 ----------------GGTKQdqeVSTEEA--PFPSLFSEEGEDLDKIDEMEEIRVNGKDKINKDdeFHVRTY------- 313  thale cress
Q2PMP0        257 KKGKKIDV--EKNLQRVQTKQkqkRSNNKE--GFLSLFSKNENNLYKIDEEK---------------------------- 304  soybean
YP_005090236  330 KNRPL--YETFYLD----GNQENSKLEILIEKKK-KNLFWFEKPLVTILFDSKRWNRPLRYIKND-QFENAVRNEMSQYF 401 
Q0ZIW0        331 KNSPV--YETSYLD----GNQENSKLEILKEDEDnKNKKWFEKPLVTLLFDYKRWNRPLRYIKARfQIKKAVRNEMSQYF 404  wine grape
Q2VEC3        337 SNSPIydYQDSYLNnnntGNLENLKLQLLDKKNEnQDLFWFQKPLVSLLFDYNRWNRPFRYIKNN-RFEQAVRTEMSQYF 415  potato
P56785        314 -------YNYKTVSenlyGNKENSNLEFFKIKKKeDHFLWFEKPFVTLVFDYKRWNRPNRYIKND-KIENIVRNEMSQYF 385  thale cress
Q2PMP0        305 -------YKLGFVK----------------------------KPLVNILFNYKRWNRPFRYIKNN-RFENVVKNEISEFF 348  soybean
YP_005090236  402 FYTCRSDGKERISFTYPPSLSTFFEMVQKKIFLFttTTEKLSSDELYNHWNYKNEQKKKNLSNEFINRVQALDKGYLVLN 481 
Q0ZIW0        405 FYTCLSDGKQRISFTYPPSLSIFLEMIQRKMSLS--TTERLSYDELYNHWIYTNEQKENTLRKEFITRIEALDNGSLTLD 482  wine grape
Q2VEC3        416 FDTCKSDGKQRISFTYPPSLSTFWKMIKRKIPLL--SLQKTLPNELDTQWVSTNKEKSNNLNKEFLNRLEILAKESLSMD 493  potato
P56785        386 FYTCQSDGKERISFTYPPNLSTFFEMIQKRIPSF--TKEKKTFDQVSTYWSLIHEEKRENLKKEFLNRIEALDKEWSVEN 463  thale cress
Q2PMP0        349 FHTCQSDGKERISFMYPPNLSTFHKMMETKFYLF--TKDKISYDELSNYWSYTNEEKRNKLSNEFVNRAKVMDKELISLD 426  soybean
YP_005090236  482 TLEKRTRLCNDKTKKEYLPKIYDPLLSGSYRGRTKFFFSPSTlnINKTSIKNSTEMVWINKIHLILLI--------SNYI 553 
Q0ZIW0        483 VLEKRTRLCNDATKKEYLPKIYDPFLNGPYRGTIKKMFSPSI--INETSRENSIEKFRINKIYGILFA--------IDYR 552  wine grape
Q2VEC3        494 ILETRTRLCNDDTKKEYVPKMYDPLLNGPYRGTIKKGVSSSI--INNTLLENWEKRVRLNRIHTIFLPn-------MDYQ 564  potato
P56785        464 ILEKTTRFCYNEAKKEYLPKIYDPFLHGISRGRIKKLPPFQI--ITETYRKNNLGGSWINKIHGLLLK--------INYK 533  thale cress
Q2PMP0        427 ILENRIRLSNDETKTKYLTKIYDPFLNGRFRGQIENVFSTSIq-YEKNEKKNT---ILINKIHGILISnntykknnSNYP 502  soybean
YP_005090236  554 EFEPK---TDRKSFSTEIAYFLNLINEFAGKSTSSFNFKGLPLFPD-YKEEKMDLE-LLQ-ILKFVFDPVLANSKNKTI- 626 
Q0ZIW0        553 EFEHT---FDRKSLSTKIGYFLNLINQFTIESPSNLNLKRLSLFPE-QGKVDSDSEdQAK-FLNFFFDRVITDPKDQTI- 626  wine grape
Q2VEC3        565 EFEQKaytIDKKPLSTEIDEFLTLINELGNEPKSSLNLKGLSLFSD-QEQRRVNSEkRTK-FVKFVFNAI--DPNETKS- 639  potato
P56785        534 KFEQTiekFNRKSLSIE---------------------KKLSFFSEpQQEEKINSEeEIK-TFKFLFDIVRTDSNDQTL- 590  thale cress
Q2PMP0        503 ELEKKiniFDRKSLVTTF-FFFNLISKFSKKLVSSLSFETLSLFPE-HEQVKINYEeEKKqIIKILFDAIRTDLNEKTIv 580  soybean
YP_005090236  627 ---KNNSLGIKEINKQVPHWSYKLIDDleQQEGENeenMAEDYEIRSRKAKRVVIFTDNQ---ENTATY--NNTKDTTDF 698 
Q0ZIW0        627 ---RKKSIGIKEISKKVPRWSYKLMKN--EEEGET---LVVYQEIRSRKSKHVVIFTDNQ---QNADTYtaNANKDIDNS 695  wine grape
Q2VEC3        640 ---GKKSIGIKEISKKVPRWSHKLITEldQQMGEFqdrASIDHQLRSRKAKRVVIFTDN------------NATNDPE-- 702  potato
P56785        591 ---IKNFMDFPEINKKVPRWSYKLISEleELEGENeenVPMEPGIRSRKAKRVVVFTDKE---PHGEIY--TNLKDNQNS 662  thale cress
Q2PMP0        581 ngnRTKCIRINEIRKKVPRWSYKFIDEleQLEGKNe---AENYQIRSRKAKRVVILTNKSkffKKYDTY--NPTGDTDNA 655  soybean
YP_005090236  699 D-QIDEVTLIRYSQQSDFRRDIIKGSTRAQRRKIAIFELFQANAHSPLFLDRIDKSLFFSFDIFELIKT--MFINWMCKN 775 
Q0ZIW0        696 E-QTNEVALIRYSQQSDFRRDIIKGSMRAQRRKIVIRELFQANVHSPLFLDRIYKPIFFSFDISGLIKL--IFENWKEKN 772  wine grape
Q2VEC3        703 ----EEVALISYSQQSDFRRGIIKGSMRAQRRKTFISKLFQANVHSPLFVDRITPLRLFSFDISELIKP--IFRNWTGKE 776  potato
P56785        663 D-QNDEMALIRYSQQSDFRREIIKGSMRSQRRKTVIWEFFQAKVHSPLFFDRIDKLFFFSFDIWGLKKK--IIKNFIWKK 739  thale cress
Q2PMP0        656 EkKKNELALIRYSQQSDFRRDIIKGSIRAQRRKTVTWKFFQKRVHSPLFLDKIEKPLFFSFDSFKSMKIffMFKIWMRKK 735  soybean
YP_005090236  776 AEFTISDytYTEKKTKEskkkdedTREDDKREERTRIEIAEAWDSILFAQIIRGCILVTQSILRKYIILPLLIIAKNCIR 855 
Q0ZIW0        773 KKLKIPN--YAEEKTRE-------KRQKAKREEKARIKIAEVWDTVLFAQVIRGCLLLTQSIFRKYIILPSLIIAKNIGR 843  wine grape
Q2VEC3        777 GEFKILE--SREEQTKReekkekdKKEDNKRKEQARIAIEEAWDNIPFAQIIRGYMLITQSILRKYILLPSLIIAKNLGR 854  potato
P56785        740 kid-------------------kkEEEQSKREETRRIEIAETWDSFLFAQIIRGSLLVTQSILRKYIILPLLIIIKNSVR 800  thale cress
Q2PMP0        736 EEFEISS--YTEERAKEsskkeeeKKKEN--EERKRIEIAEAWDSIIFAQVIRGILLITQSILRKYILLPSLIITKNIAR 811  soybean
YP_005090236  856 ILFFQIPEWSEDLKDWSREMHIKCTYNGVQLSEKEFPKNWLTDGIQIKILFPFRLKPWHRSKLKFPH--KDPMKK---KV 930 
Q0ZIW0        844 MLLFQSPEWSEDLKDWNREMHVKCTYNGVQLSETEFPQNWLRDGIQIKILFPFCLKPWHKPQERSLD--KDSMKD---KV 918  wine grape
Q2VEC3        855 MLFLQLPEWSEDLQEWNREMQIKCTYNGVQLSETEFPKDWLRDGIQIKILFPFCLKPWHISKLYPSR--GELMKK---QK 929  potato
P56785        801 MLLFQFPEWSQDLKDWKREMHVKCTYNGVQLSETEFPRNWLTDGIQIKILFPFYLKPWHKSKFQASQ--KARLKKtkdKG 878  thale cress
Q2PMP0        812 ILFFQFPEWSEDFRDWKREMYIKCTYNGVQLSEREFPKKWLTDGIQIKILFPFRLKPWHKSKLRSNEkkKDLMKKk---- 887  soybean
YP_005090236  931 QRndFCFLTVLGMEAELPF-GFPRKR--LSLFEPIF 963 
Q0ZIW0        919 KK--FCFLTVWGMETDLPF-GSPRKR--PSFFKPIL 949  wine grape
Q2VEC3        930 QKddFCFLTVWGMEAELPF-GSPRKR--PSFFEPIF 962  potato
P56785        879 EKndFCFLTVWGMETELPF-GSAQRK--PSFFEPIs 911  thale cress
Q2PMP0        888 ---nFCFLTVWGMEVDLPFsGSPQKNrfSSFFDPIF 920  soybean
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