Conserved Protein Domain Family
Sig70_bacteroi1

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TIGR02985: Sig70_bacteroi1 
RNA polymerase sigma-70 factor, Bacteroides expansion family 1
This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Statistics
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PSSM-Id: 274376
Aligned: 43 rows
Threshold Bit Score: 143.856
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_008760954   1 MDFSELYLTYYSKLVRFAKEFVILEEDAENITQDVFTDLWAKRDSM-DRIENMNAYLFRLIKNRCLDHLKHKM-FEQKYI 78  Bacteroides
WP_014226032  12 reFESLFRRMQPQLFAFCRKYVDDEECARDIVQECFIGLWEHYD---DSIHSYESYLFRSVHNRCLSFIRSRK-VGAAYY 87  Tannerella fors...
WP_005797853  11 KKFEQFFIMTYPKVKAFAWKLLKSEEDAEDIAQDIFAKLWTNPEIW-ENQETWNSYIYTMVRNHIYNFLKHKS-IRQTYQ 88  Bacteroides fra...
WP_005784499  21 iAFKALFMRYYPKVRSFIMGLVKSESEAEDLTQEVFLKLWTHREKF-CEVEVFGTYLYVLTKNTTFNYLRSRQ-NRQDSQ 98  Bacteroides
WP_010538507  12 qqFETIFTKYYSVVKYFALMLLKSEEDAKDITQDVFTKLWTKPELW-AEVPNPTPYIYTLTKSTTLNFIKHKK-VELAYQ 89  Bacteroides
WP_005798859  19 QKFEGFFLDYYPRVKGFINGLLQDAEEAEDLSQDIFMSLWQNRGNL-KQIDNLDAYLFRIARNAVFRYIERSL-LFKNYQ 96  Bacteroides
WP_008765757  19 KAFETVFIAYYNKTKAFIDGYIKSESDAEELTEDLFVNLWINHDSI-DASKSFSSYLHTIARNSAINFLKHKY-VHDTYL 96  Bacteroides
WP_005801526  21 HAFVTVFERYNRLLYALAYRYFKSGEEAEDAVQYTFMKLWEQRSSF-EFQSGIRSLLFTILKNYIMNELRHRQiVFEKHY 99  Bacteroides
WP_014224759  16 aSFEQLYKKYHPSIYAFCKRLIYDDEKAKDLVQECFIIFWEHRNRI-LNPEAAYTYMFRTIRHLCLRQIHRDT-VQKNFS 93  Tannerella fors...
WP_011086475  62 TAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWqHGRAKFSTWLYRVISNRCID-LRRKP-RTENVD 139 Bradyrhizobium ...
WP_008760954  79 -E--SVQTSFEIE--MS----LklqslnRFDVSDISEgNETEMLVRNAINSLPRKCRDIFLLSRVEGLKYREISERLGIS 149 Bacteroides
WP_014226032  88 -E--DVVRWRIRE--IElhpeE------PDPLADLYV-KELHGMVHRIVEKLPVKCRKIFEMSRYRGMKNQEIATVLGLS 155 Tannerella fors...
WP_005797853  89 -E--QCTKEEPA---IS----E------TDIHDQLYA-KESELLIKLTIANMPEQRRKIFRMSRTQEKSNQEIADELNIS 151 Bacteroides fra...
WP_005784499  99 gT--EWVE----E--ST----D------TTPYEELVA-KDLQLLIDMVVENMPPQRQMIFRLNREAGLTNAEIAEKLQIS 159 Bacteroides
WP_010538507  90 -E--KIIEKTLIDelFQ----S------EDTLNPIYY-KEAQLIIKLVLERLPEQRRMIFEMSRFKHMSNLEIAEKLNIS 155 Bacteroides
WP_005798859  97 -S----RQLSDDN--SD----L------YEIESELNA-KELELIIAIAVERMPSQRRKIYQMSREQGLSNENIARELNIS 158 Bacteroides
WP_008765757  97 -N--SSQEIEYSS--TS--------------EEDLIA-KELGLLIDDIVGKMSEQRKMIYTLSRQEGLSNAEIAIQLNTT 156 Bacteroides
WP_005801526 100 -E--MAQRNEEAD--DS----F---------LKNFED-KDFREHLRTAIGKLPPQKQKICRLKIEKGLSNQEIADEMHIT 160 Bacteroides
WP_014224759  94 nI--EMAFLQELE--IS----Yyda-sqQNILDDMNF-KELNTKYEETIDKLPKQCQTIFKMSRNSGMRNEDIARQLNLS 163 Tannerella fors...
WP_011086475 140 -TvpEVADGRPDA--SR----V------------IER-NELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDST 199 Bradyrhizobium ...
WP_008760954 150 VNTVECQMGIALKKLRVKL 168 Bacteroides
WP_014226032 156 VRTVEVQIYNALKIFKTAF 174 Tannerella forsythia
WP_005797853 152 IRTVERHIYLALIDLKKVL 170 Bacteroides fragilis
WP_005784499 160 KKTVENHLNLALKELKNAL 178 Bacteroides
WP_010538507 156 KRTVEHHIYLTLLEMKKII 174 Bacteroides
WP_005798859 159 KRTVENHLTQALADIRKIL 177 Bacteroides
WP_008765757 157 KRNVESQLSLALKEIRKAI 175 Bacteroides
WP_005801526 161 VPTVKSHYTQAIKILRAEI 179 Bacteroides
WP_014224759 164 VRTVENQLYRGIKIIRKSL 182 Tannerella forsythia
WP_011086475 200 VAAVESLLKRGrqqlrqll 218 Bradyrhizobium diazoefficiens
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