6W1S


Conserved Protein Domain Family
Med29

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pfam11568: Med29 
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Mediator complex subunit 29
Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-active part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med29, along with Med11 and Med28, in mammals, is part of the core head-region of the complex. Med29 is the apparent orthologue of the Drosophila melanogaster Intersex protein, which interacts directly with, and functions as a transcriptional coactivator for, the DNA-binding transcription factor Doublesex, so it is likely that mammalian Med29 serves as a target for one or more DNA-binding transcriptional activators.
Statistics
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PSSM-Id: 431937
Aligned: 24 rows
Threshold Bit Score: 157.461
Created: 24-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6W1S_X         1 DFDPVQRYKMLIPQ-LKESLQTLMKVAAQNLIQN-TNIDNGqk--sSDAPLQRFDKCLEEFYALCDQLELCLRLAHECLS 76  house mouse
XP_009019382  39 QMDPISKVRLMLPQ-LKESLNRLYSESSTMLNSN-FQDGFElvkpvDPSASNRIEKSLEKFHSVCDAMEVNLKLSMEVLV 116
XP_002606601   2 EVDPVSKFKLLVPH-LKESLVNLMRIAGQNLVHN-AAIDNQlk--sGDNPSQRVDKNLEEFYSTLDQIELNLRLAQECLT 77 
EGT34724     316 VQDPVDLVRNLVQKdLRNCLVEMNKRGAVLVKKR-FEGDSV-----LDEDKEQYKRSANDFDAVCDDVDRMLTTIMETAK 389
XP_018669516  78 NKDPVHNAKAILPH-LKESLVNLMAVASQNFAVS-VSVDDMqk-vvDASNVPRFDKCLEHFYNLCDQLELQLNLGHHQLS 154
3_pfamImport   2 NKDPVQKAKALLPH-LKESLVNLMAVASQNFAVS-VAVDDMqk-svDTSSVPRFDKCLEHFFSLCDQLEVQLNLGHHQLS 78 
Q60YF6       323 VQDPVDLVRNLVQKdLRMSVVEMNKRGAELLHQK-EEGAIK------EEDRQQYKRATNDFHAVCDEIDRTLTTIMETAK 395 Caenorhabditis ...
EFO86856     344 VQDPVDLVRNLVQKdLRNSVVEMNKRGADLVRQR-EEKNVN------ESDRAQFKRAANDFHAVCDEIDRTLTTVMETAK 416
2_pfamImport   2 VQDPVDLVRNLVQKdLRNSLVEMNRRGAVLVRQReEEGEIS------QEDKQQYKRAANDFNAVCDEIDRTLTTVMETAK 75 
XP_015790079  16 KYDNIARVKTLVWS-LKQSVQGLIKISAAYISHN-AAVDSGlk-apDDKVLPAFDKAFEDFHSLLNQIELHFKTIQECAI 92 
6W1S_X        77 QSCD--------SAKHSPTL----VPTATKPDAVQPDS---LPYPQYLAVIKAQITCAKDIHTALLDCANKVT 134 house mouse
XP_009019382 117 HYTE--------SRRYVARN----VADMTAG---STQAadaLTYQQYASVVKSQAEYAKEIKDLINACAKKVN 174
XP_002606601  78 QHQE--------SVRHAPLP----VPIMSKPEPSGEGQt--MPYGQFLGLARSQVTCAKEIHDALVRCADDLg 136
EGT34724     390 QLSKlekvfnerTLRDQDGE----VMVNQVQTFVDNTDivqKMFDDTINNVTATMEKVRRREKKWEDLQKEQQ 458
XP_018669516 155 QALA--------SIQHTPLM----RNVNLKDDANGPQI-----YGNYINTVESQLQCAEEIQNLLLNCCKKLQ 210
3_pfamImport  79 QALV--------STQNTPFM----RNVVLKENPNGAQL-----YGSYVNTVESQLHCVKEIHDLLSNCCKKLQ 134
Q60YF6       396 QITKldkvfqdrTSKEIDGE----AMVNSVQKFVDETGivqKMFDDTVNSVTSTMEKMRRRQKKWKDQQQQQE 464 Caenorhabditis briggsae
EFO86856     417 QLIKlekvfmdrNSKELDGE----LMVNSVQSFVDNTDivqKMFDETIGGVTASMEKMRRRQKKWEDLQKETQ 485
2_pfamImport  76 QLSKldkvfierSTKELDGE----VMVNCVQKFVDNTEivqKMFDGTIGNVTATMEKIRRREKKWEDLQRKKK 144
XP_015790079  93 QQRQ--------SQKYLPGPdkykAGPPKTEPYMDSGSdheLPYNQYIHLIRGQLSFVESLQKILLDGSRKIE 157
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