2EFG,1JQM,2XEX


Conserved Protein Domain Family
EF-G

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cd01886: EF-G 
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Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains both eukaryotic and bacterial members.
Statistics
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PSSM-Id: 206673
Aligned: 61 rows
Threshold Bit Score: 394.166
Created: 6-Jan-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:GTP/Mg2+ binding site [chemical binding site]
Evidence:
  • Structure:2EFG: Thermus thermophilus EF-G binds GDP, defined using 3.5 A contacts
  • Citation:PMID 8070397

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # ####                                                                  
2EFG_A     14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEgAATMDFMEQERERGITITAAVTTCFWk------------------ 75   Thermus thermophilus
CAA22530   30 NVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTgDTVMDYLPAERQRGITINSAAISFTWr------------------ 91   fission yeast
NP_012433  43 NIGIIAHIDAGKTTTTERMLYYAGISKHIGDVDTgDTITDFLEQERSRGITIQSAAISFPWr-----------------n 105  baker's yeast
AAK29716   27 NIGVIAHVDAGKTTVTERLLYLAGAIHVAGHVDKgNTVTDFLDIERERGITVQSAAVNLDWk------------------ 88   nematode
NP_733781  72 NIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDgDTVTDFMAQERERGITIQSAAVTFDWk------------------ 133  human
XP_448932  25 NIGIIAHIDAGKTTTTERMLYCAGKIKRIGDVDSgDTVTDFLPQERDRGITIQSAAISFQWhdss-----------rdns 93   Candida glabrata ...
XP_455710  25 NIGIIAHIDAGKTTTTERMLYYSGKINRIGDVDQgDTITDYLPQERSRGITIQSAAISFNWk-----------------k 87   Kluyveromyces lac...
XP_501982  17 NIGIIAHIDAGKTTTTERILYLSGTIKHLGNVDEgDTTMDFLPAERERGITIASAATSFNWn------------------ 78   Yarrowia lipolyti...
EAL91882   71 NIGIIAHIDAGKTTTTERMLYYSGFTRRIGDVDEgSTVTDFLPAERARGITIQSAAITFHWpptagesdkqevqtprsas 150  Aspergillus fumig...
XP_718715  31 NIGIIAHIDAGKTTTTERMIYYSGRTKRIGNVDEgDTVTDYLPSERERGITIQSAAITLPWn------------------ 92   Candida albicans ...
Feature 1                                                                  ## #               
2EFG_A     76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYkvPRIAFANKMDKTGADLWLVIRTMQE 155  Thermus thermophilus
CAA22530   92 NQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAGVEAQTKVVWKQATKRgiPKVIFVNKMDRVGSSLGSTIRSIYT 171  fission yeast
NP_012433 106 TFAINLIDTPGHIDFTFEVIRALKVIDSCVVILDAVAGVEAQTEKVWKQSKSK--PKICFINKMDRMGASFNHTVNDLIN 183  baker's yeast
AAK29716   89 GHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAGVQPQTLTVWRQSSKFklPAHFFINKMDKLAANFENSVDSVEQ 168  nematode
NP_733781 134 GYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKHniPRICFLNKMDKTGASFKYAVESIRE 213  human
XP_448932  94 PRVINLIDTPGHADFIFEVIRSLKVLDGAVLILDGVAGVEAQTEKLWRYSRNI--PKICFVNKMDRVGAGFSKTLKELTY 171  Candida glabrata ...
XP_455710  88 DYKINLIDTPGHADFTFEVIRSLKVLDSCVTILDSVAGVEAQTEKVWKQSSGL--PKICFLNKMDRVGAGFSRTVKELVV 165  Kluyveromyces lac...
XP_501982  79 NHTVNLIDTPGHADFTFEVIRSIRVLDGAVCILDGVAGVEAQTEKVWKQASEMgiPKIAFVNKMDRAGAGFGRTVKEIVS 158  Yarrowia lipolyti...
EAL91882  151 SHTINLIDTPGHADFTFEVLRSLRILDGAVCILDGVAGVEAQTERVWHQASTYriPRIVYVNKLDRDGAAFGRTVREVGS 230  Aspergillus fumig...
XP_718715  93 QHKINIIDTPGHADFTFEVIRSLRVLDGAVTILDAVAGVEAQTEKVWKQASALnlPKVVYVNKMDRPGAGFSRTVQEVIQ 172  Candida albicans ...
Feature 1                                                                                     
2EFG_A    156 RLga----rPVVMQLPIGre------dtFSGIIDVLRMKAYTYgnd----lgtDIREIPipe-------eylDNAREYHE 214  Thermus thermophilus
CAA22530  172 NLdc---pyPLVLQLPVYsdgl--qerkFLGILDILQQKMILWdtsdnklgtdGTHVQElpip-----eshmERFIEARN 241  fission yeast
NP_012433 184 KFmrgtttkPVLVNIPYYrkqptsndyvFQGVIDVVNGKRLTWnpe----npdEIIVDEldg-------tslEQCNRCRE 252  baker's yeast
AAK29716  169 KLgv----rAVKLVVPLPenr-----gfNRGFLDILHSKMLPGnsk----nwqNPPKNSpe----------aELLAEHKS 225  nematode
NP_733781 214 KLka----kPLLLQLPIGea------ktFKGVVDVVMKEKLLWncn----sndGKDFERkpllem-ndpellKETTEARN 278  human
XP_448932 172 KTdr----rCVVVNFPYFeqtnqsedpvFCGVIDVINMKLLKWdtk----ansPDAVTVvdllelndsdnakVEAIKSRE 243  Candida glabrata ...
XP_455710 166 KMnt----rALLINTPIFqvdpvtneskFSGVLDLIYGKQLIWdtn----dpdKINVTDvden-----hdcyEYLVRGRE 232  Kluyveromyces lac...
XP_501982 159 KLrt----rVALLTVPVFskss---dqvFEGVVDILNGCVITWttg-----gdGKQTVVvpvsea--saevqEEYQKART 224  Yarrowia lipolyti...
EAL91882  231 RLga----fPAVCQIPWFeng----ngrFVGVADAINLQGLRWeeg----dgkVVKMLSleqlda-eeaqlgKELRRARI 297  Aspergillus fumig...
XP_718715 173 KLet----rVVLCNLPYFetnke-sdleFKGVIDVIHQKLLKWnet----danGNEISVvnidet--tpdllQILEKSRE 241  Candida albicans ...
Feature 1                                                             ###                   
2EFG_A    215 KLVEVAadfdENIMLKYLEgee------pteEELVAAIRKGTIdl---kiTPVFLGSALknkGVQLLLDAVVDYLPSP 283  Thermus thermophilus
CAA22530  242 ALVMSLcdvdETLCDEYLEnedsl---aftnDRLFKIIKQKTIsg---nvVPVLCGSSLkniAVQPIMDAIIDYLPSP 313  fission yeast
NP_012433 253 SMIETLteydEDLVQHFLEeaegdy-skvsaQFLNASIRKLTMkn---miVPVLCGASFkniGVQPLLDAIVNYLPSP 326  baker's yeast
AAK29716  226 ELCFTLadshADFQSKFLDefdgns-ekidvIEMKSVLRELTCas---kiATISCGSAIthdKRRGQLSYMRIYTGSL 299  nematode
NP_733781 279 ALIEQVadldDEFADLVLEefsenf-dllpaEKLQTAIHRVTLaq---taVPVLCGSALknkGIQPLLDAVTMYLPSP 352  human
XP_448932 244 SMVEILgeldDVFVQEFFDgpsegnslkvsaQVLNKSIRKLTIan---elTPVLAGASFknvGIQPLLDGIIQYLPSP 318  Candida glabrata CB...
XP_455710 233 ALVETLgetdESIVEHFFNdadgey-lnvspEVLNASIRKATIsl---saTPVLCGASFrniGVQPLLDAIANYLPSP 306  Kluyveromyces lacti...
XP_501982 225 ALVETLteldEELVEKFLEsedym---qittEDIKRALRTATInn---diVPVLCGASFrniGVQPLMDAVVDFLPSP 296  Yarrowia lipolytica...
EAL91882  298 ALVELLsehdEAMVEKFLEcdenh--lavppQDILESLRRCLLeesgsniVPIFAGASFrniGVQPLLDAVVNLLPSP 373  Aspergillus fumigat...
XP_718715 242 SMVETLgeydERIIDSFLEhdeny--lkippMLLDQVIRKATIdn---ylTPVFCGASFrniGVQPLMDGITKYLPSP 314  Candida albicans SC...

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