Conserved Protein Domain Family
tape_meas_lam_C

?
TIGR01541: tape_meas_lam_C 
phage tail tape measure protein, lambda family
This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage. [Mobile and extrachromosomal element functions, Prophage functions]
Statistics
?
PSSM-Id: 273681
Aligned: 5 rows
Threshold Bit Score: 308.692
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
AAF30367      429 TEQQKLQFDIADGKLQGLNETQKKRLASLAQEVDRLNAVKKA----------NEENAK-VAAFVANLQEQNENARADLGV 497  Enterobacteri...
CAD15392      578 DQKSLLAHQSEIRAQLDLNVAAEQAIQKRKDETAELEKQRKLl---------EDARQQ-AEGMRVRIADAAQARSEQFGR 647  Ralstonia sol...
CAC90930      790 NRLLKFTQKIADLKSKTILTADQKSLLSRSSEIIASIKLEAQls-------rENVERKkATEALKKMEEYTASIVAKNKQ 862  Yersinia pest...
KFT12321      272 KQLLSFQQRIADLSGKKLTADEQSVLAHKDEIALALQKLDISqqdlqhqnalNELKKK-TLTLTSQLADEESRVRQQHAM 350  Salmonella en...
WP_021502572   33 AHAALLTLQAELRMLEKHAGANEKISQQRRDLWKAESQFAVL----------EEAAQRrQLSAQEKSLLAHKDETLEYKR 102  Escherichia coli
AAF30367      498 DIHGAGLGDKQRERLRERLSIERSYLDQQRDLQKQYQS-----------GDISQTVYDRETQALKDAQAERLGIQEDYYS 566  Enterobacteri...
CAD15392      648 QLDAFGLGQRANEELAAAKSIYREFGSMRTDWNKSMTKr----------GLAGSDLYKEGLAQINASEQEALQQLGAYYD 717  Ralstonia sol...
CAC90930      863 NQDRFGLTSKQAGRVDQETQLDNTFRKDTKGINDA-----------------------EQLAKITAEYNKAKAELHAGFE 919  Yersinia pest...
KFT12321      351 ALATMGMGDQQRGRYEERLKIQQHYQEQLEQLKRDSKAk----------GTYGSDEYRQAEQALKGSLDRRLAEWADYNA 420  Salmonella en...
WP_021502572  103 QLAVLGDKVTYQEHLNALAQQADKFAQQQRAKRAAIDAknrgltdrqaaREATEQRLKEQYGDNPLALNNVMSEQKKTWA 182  Escherichia coli
AAF30367      567 QIDALQSDWVTGARDGLADWVDDSTNYATLAADAMKSALSGISSNIVDMLNGNKASWKDWGVSVLKIIEQVMVNMMIANA 646  Enterobacteri...
CAD15392      718 ALAAKQADWKYGALSALADYRDAAANVAASAQQLFSNAFQSMEGAVAKFATTGKLDFKSFALSVIEDLARIQARAAISGL 797  Ralstonia sol...
CAC90930      920 QEDLNEGNWLAGMTQGLEQYGETANNVFSATAQLAQTTMGSMTSMANQMMTTGSANVKQFATNFMSSIVDIINKLLLAQM 999  Yersinia pest...
KFT12321      421 KVDAAQGDWTLGASRALDNFLAQGGNVAGMTENVFTNAFNGMADSIANFAVTGKGSFRSLTVSILADLAKMEARIAASKL 500  Salmonella en...
WP_021502572  183 AEDQLRGSWMAGLRSGWSEWEESATDSMSQVKSAATQTFDGIAQNMAAMLTGSEQNWRSFTRSVLSMMTEILLKQAMVGI 262  Escherichia coli
AAF30367      647 ASSIGSLFGGAASSs-aS-SGTAIQSYGASLQFNAKGgV-YSSADLSQYSNSVVSSPT-LFAFAKGAg-LMGEAGPEAIM 721  Enterobacteri...
CAD15392      798 AQMGISLVGSLFSGa--M-SSGAGAFSGAATAAASSG-T-VPVAGDMLYGSSMQAPSYtSGVFLSGA--RAGGGPVDAGG 870  Ralstonia sol...
CAC90930     1000 IQTAMGWIGGAVSGgndP-GAVPMGLYNGGYVPEFAG-G-GYTGEGGKFEPKGVVHGG-EFVFTKEAtnRIGIDNLYKMM 1075 Yersinia pest...
KFT12321      501 LGSVLAMFGFGTSAg-gStPSGAYSSAALSVIPNADG-GvYRSAGLSQYSGSIVNRPT-FFAFAKGAg-VMGEAGPEAIL 576  Salmonella en...
WP_021502572  263 VGSIGSAIGGGa-----S-ASGGTAIQAAAAKFHFAA-G-GFTGTGGKYEPAGIVHRG-EFVFTKEAtsRIGVGNLYRLM 333  Escherichia coli
AAF30367      722 PLTRAADGSLGVRAMGISGLTpggSSAPQVSIQIDGNG 759  Enterobacteria phage HK022
CAD15392      871 LYLVGEEGPELFKPSGSGSIVpnhAIGGGGDVTVNVIG 908  Ralstonia solanacearum GMI1000
CAC90930     1076 RGYADGGVVSNAVTATAPMLG---MQGGETAISVDLSG 1110 Yersinia pestis CO92
KFT12321      577 PLRRGADGKLGVVAAGSGGMA---MFAPEYNIEIHNDA 611  Salmonella enterica subsp. enterica serovar Bareilly st...
WP_021502572  334 RGYATGGYVGTPGSMADSRSQasgTFEQNNHVVINNDG 371  Escherichia coli
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap