Conserved Protein Domain Family
ZntB-like_1

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cd12833: ZntB-like_1 
Salmonella typhimurium Zn2+ transporter ZntB-like subgroup
A bacterial subgroup belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subgroup includes the Zn2+ transporter Salmonella typhimurium ZntB which mediates the efflux of Zn2+ (and Cd2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, which occur in proteins belonging to this subfamily, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.
Statistics
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PSSM-Id: 213367
Aligned: 81 rows
Threshold Bit Score: 320.595
Created: 26-Jul-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:oligomer interface [polypeptide binding site]
Evidence:
  • Comment:based on Thermotoga maritima CorA and on partial structures: the intracellular domains of Vibrio parahaemolyticus and Salmonella typhimurium ZntB; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                #  ##         # #                                      
EDM60670     27 PNHWYHCERLhpdIRSWLEDn-HVPRATVDHLLADESRPSFHPLdddNFMLILRGINMNENASPEDMLSIRILYFQGALI 105 Vibrio parahaemo...
ABK45030     35 GFLWLHWKLDsdgLHRWMNEssHLDPVVGDVLNSTENHPRLIREg-dSLLGTLRGLNFNQQSEPEDMVFVNIYIDNNRAI 113 Magnetococcus sp...
EDQ06136     27 RYRWWHYDLSdpaLEPWLAT--HLPAIPAGALLQPETRPRCDEYe-dGLILNLRGINLNEGQQADQMVSIRMWVTDAVVI 103 Oceanibulbus ind...
EEB85012     27 VYRWWHFDLTdpmLEPWVRK--HLHEIPAGSLVQKQTRPRCDRFe-gGLILNLRGINLNVGQAADEMVSVRMYVDSDLLI 103 Roseobacter sp. ...
ABC21519     51 ERLWIHLHRGwpkANRWLKEvlAIPRPARRDLLAESTRPDSAFLg-eGVLLNMRGINVNPGADPEDMVSLRLWITTSLII 129 Rhodospirillum r...
EEY71798     28 SGNWYHCQRDaigLRGWLTEn-KVPEAIIDSLLTDDTRPRFEQFhddCFLVILRGINLNEGSEPDDMLSLRILWFNGAII 106 Grimontia hollis...
AAV81902     26 ENTWFHFQRDadgLTEWLTQa-GIPEPLIDAVLEEDTRPRFQRLp-dGFMLLLRGVNLNTGESPEDMLSLRLLYYKGALY 103 Idiomarina loihi...
AEH32441     27 AGNWYHCQRDipgLKEWLLQy-QIPTSIVDSLLAEDTRPLFEQYdddNFLLILRGVNMNDNANPEDMLSVRILYFNGALF 105 Listonella angui...
ZP_10296763  30 QNYWVHCDRSsaeFEHWLESl-GFDESIIESLLATDTRPRFQQIdknSFFLILRGVNLNTGKEPDDMLTVRLLYTPERVV 108 Pseudoalteromona...
AAO10193     27 ANHWYHCERHhpdIRAWLLEn-QVPLSTVNHLLADETRPSFHRYdddSFMLILRGVNMNENAVPEDMLSIRILYFNGTLI 105 Vibrio vulnificu...
Feature 1                  #   #           #  #   #   #  ##  #  ## ##  #                 ## ##  
EDM60670    106 STRKIPSRAIMEIRQALAeHKGPKSLASLLNQIIEGLNGKIDLYLDTIEETLNEFDVNDe------------STYNHIAA 173 Vibrio parahaemo...
ABK45030    114 TARRDRVMTIHDIALDLQnNCGPMRPGGFLATILDSLHARMEPLLGTLEEELDLHEQALlmgeg----ekesLREELLML 189 Magnetococcus sp...
EDQ06136    104 TVRMRRVFAIDELRTLATeNNAPRQPSAFLEALVSRLTARVQTEVARLADRTAFYETDLedl-------stlPPKDLPVT 176 Oceanibulbus ind...
EEB85012    104 TVRRKKVFAIDAIRHAAVaQKAPPSPAEFLEELILRLTQRVQEHVETLDEKTEFFELDLedk-------etpMPHELPEI 176 Roseobacter sp. ...
ABC21519    130 TSRARFILAAKDVRAQLAqGQGPVDCGGVAAALALGLAERMQPFLLELEDAIYALDERDeelrennplveeeIEEGLHQS 209 Rhodospirillum r...
EEY71798    107 STRKVPSRAVSRLIERLEmGKGPGSLPALLVGMATGINGIISDFLSPVEESIDGLDEVNv-----------aNLKTLNTL 175 Grimontia hollis...
AAV81902    104 SFRKRPFLSIAKLREQLDqQMGPESLHDFIVALIEQLNLRIEDVVSSAEQQLEVIEGEGfdn-------tasVQIKLTAL 176 Idiomarina loihi...
AEH32441    106 STRKIPSKAVNVIRDLLQaGQGPQTLSDVLVQIVDGLNKNIDNYLNSIEAKITQYDNEIe------------LSDELMQT 173 Listonella angui...
ZP_10296763 109 TCSIQRLRAIEAMASQLKkNKGPDTLESLVIELLSQLNAKIESVIEPIEQFINAQDNDAfs---------sdAIAEISVK 179 Pseudoalteromona...
AAO10193    106 STRKTSSKAISEIREALVeQKGPAAIADLLLAIVDGLTGKMQHYLLDIEEQIEQFELDTd------------QIGDIIEV 173 Vibrio vulnificu...
Feature 1       ##  ## ##   # ##  ##  ##          ## ##  ## ##  ## ## ###  ######## ############
EDM60670    174 QKALISIKRFIRPQQYAIRDLIESe-sELVTSRPHQYRFAHNNITRINETIEFYLGEVALFQDEIKHNRDEKTNKNSYLF 252 Vibrio parahaemo...
ABK45030    190 RRKVINLRRYLAPQKIALALLSKSppsWLNKGRTRQIREVEHELQRYLGDLESYRERAVVIREEINNQMNVRMNRAMYML 269 Magnetococcus sp...
EDQ06136    177 RRSTIKLERYLAPQRSALERLAELdlpLVPEVDSMKLRELANRTAIVVEELDALQERIVTVQDEHDNQVAQRQARHGYVL 256 Oceanibulbus ind...
EEB85012    177 RRSVIRLRRYLEPQRAALSKLATLdmpLIPQDSQLELHEQANSALIAVEELDELRERLVSVQEEHDANVAQRQARHGYVL 256 Roseobacter sp. ...
ABC21519    210 RIDIVSLRRYLAPQQAALTRLMGHphpALSAQDREILGAALATFTRYVEDLDSLREQAALLRDRIQQRAQQRINRSIYKM 289 Rhodospirillum r...
EEY71798    176 NSRLLRLRRYLKPQHYVFEDLLHAd-iPVLKPHKNHIKNCLDTTARINESIDFYIDQINLYQTNVNQQQAEVMNRNTYLF 254 Grimontia hollis...
AAV81902    177 HRRLLRLNRFIRPQLAALEKLSTEtekVMSTELHQWLINERDTTQRLFEQIDLMLEQVWMQREQLQQAIAEKMNRNTYWL 256 Idiomarina loihi...
AEH32441    174 HKALLKIKRFIKPQQYAIDDFSDSk-vSLANDKNLRLRHSVNTITRINETLDFYLGELELIKGELRQYHAEKMNQNTYLF 252 Listonella angui...
ZP_10296763 180 HRKLLRLNRFLKPQLYALSALSKNn-vAAFNDYHVELATELDTLSRIVDTIDFYIAQIDVINNRISQINSEVMNRNTYIL 258 Pseudoalteromona...
AAO10193    174 QKALLRIKRFIRPQQYAIADFAMAe-lGLLEKKQLMLNYALSNITRINETIDFFLGELALLKEQIQQLREDKISRNSYLF 252 Vibrio vulnificu...
Feature 1       # ### ###### ########           ##  ##           #  #    
EDM60670    253 TLVATIFLPTSFLTGLLGINIGGMPGVESSMAFTWFCIALivIFGLEWLLFKRLGFT 309 Vibrio parahaemolyticus AQ3810
ABK45030    270 SLITGIFLPLGFLTGLLGINVGGMPGADNPWAFWLVCLLMiaVTAINLFVFYRKKLL 326 Magnetococcus sp. MC-1
EDQ06136    257 SIAAAVFLPLGFLTGLFGVNVGGMPGVDDPRAFAILCLAMvgLAAIMLAILKWLRWL 313 Oceanibulbus indolifex HEL-45
EEB85012    257 SVAAALFLPLGFLTGLFGVNVGGMPGTGDPWAFALLCLGMvaLAGVMIAVLRLVRWI 313 Roseobacter sp. GAI101
ABC21519    290 TLLAGIFLPLTFFTGLLGVNLGGMPGAQSPFGFWILVGLLvaLAIGEFLYIRHSRRF 346 Rhodospirillum rubrum F11
EEY71798    255 SVIAGIFLPAGFFTGLLGVNIGGIPGVENPMAFTLFCLSLiaVVALEVVILKRLRFI 311 Grimontia hollisae CIP 101886
AAV81902    257 SVIAGVFLPLSFLTGVFGINIGGMPGVESEGAFMIFCGALviIAIVEFLLLRRLRFW 313 Idiomarina loihiensis L2TR
AEH32441    253 SVIAAIFLPTSFLTGLLGVNVGGIPGTESPVAFALFCVALvgIFGLEFWILHRLRFF 309 Listonella anguillarum 775
ZP_10296763 259 SIIAGIFLPLGFLTGLFGINVGGMPGVDNPHAFYWFCGVLtgIGVVALVMFRRWKFL 315 Pseudoalteromonas spongiae UST010723-006
AAO10193    253 TLIASIFLPTSFLTGLLGINIGGIPGVESPLAFLWFCIGLvvIFAAEVLLLKRLKFW 309 Vibrio vulnificus MO6-24/O

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