3KQ0,3APU


Conserved Protein Domain Family
lipocalin_AGP-like

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cd19451: lipocalin_AGP-like 
alpha1-acid glycoprotein and similar proteins
Alpha1-acid glycoprotein (AGP), also known as orosomucoid, has many important biological roles such as in the acute-phase reaction in response to inflammation, in immune regulation, in drug-binding and drug-transportation, in regulating sphingolipid synthesis and metabolism, and in maintaining the capillary barrier. This subgroup belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.
Statistics
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PSSM-Id: 381226
Aligned: 14 rows
Threshold Bit Score: 234.17
Created: 12-Feb-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 24 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding cavity [chemical binding site]
Evidence:
  • Comment:hydrophobic cavity binds different hydrophobic ligands; ligands are bound within the beta-barrel in a central internal water-filled cavity lined with polar and hydrophobic amino acids
  • Comment:based on apolipoprotein M, alpha1-acid glycoprotein, and on other lipocalin/cytosolic fatty-acid binding protein family members with structure
  • Structure:3KQ0; Homo sapiens alpha1-acid glycoprotein with bound (2R)-2,3-dihydroxypropyl acetate, contacts at 4A
  • Structure:3APU; Homo sapiens alpha1-acid glycoprotein with bound tetraethylenglycol, contacts 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                           #   # #             #       # #        # # #                 
3KQ0_A         3 PLCANLVPVPi-TNATLDQITGKWFYIASAFRnEEYNKSVQeIQATFFYFTPNKTEDTIFLREYQtr------------- 68  human
Q3SZR3        21 PECANLMTVApiTNATMDLLSGKWFYIGSAFRnPEYNKSARaIQAAFFYLEPRHAEDKLITREYQti------------- 87  cattle
ELK08232      21 PKCFNFTVPL--TNATLDQITGKWFYIASAYRrPEFKKSASmLQSVFFYLAPNYTEDTVLVREYWtmtvivhlsytvllv 98  black flying fox
XP_003479196  21 PACANVTAMPi-TSATLDWLNRRWFYAAGAFRkPEYKQEVQaLQAEFFYLDTHPREDTVTLREHMti------------- 86  domestic guinea...
EGW06649      21 PEHANIIGKPi-TNDTLSWLSGKWFYLGSAFRnLEYKQEIQkVQAGYFYFTPNLTDDTILLQEYQtk------------- 86  Chinese hamster
XP_001508942  21 PACENLQVKAl-SDAMMDQLEGKWFYISGVMRlPEYKKAAGmIQSAYFYLKPNTSANNFFLEEYStv------------- 86  platypus
XP_001488181  21 LGCANFTAAPm-TNATLDHISGKWFYIAGASHnPEYLEVMKtYQASYFYCDANHTEDTIQFREYSti------------- 86  horse
112881        21 PEPANITLGIpiTNETLKWLSDKWFYMGAAFRdPVFKQAVQtIQTEYFYLTPNLINDTIELREFQtt------------- 87  Norway rat
Q60590        21 PEHANFTIGEpiTNETLSWLSDKWFFMGAAFRkLEYRQAIQtMQSEFFYLTTNLINDTIELRESQti------------- 87  house mouse
ELK26647      21 PACPNFSVPI--TNASLDQISGKWFYIGSAYRfPEYKKEASkIHAAFFYFTPNHTEDTILLREYMti------------- 85  Myotis davidii
Feature 1                       # # #        ###      # # #        # # #                      # #
3KQ0_A        69 ---------qdQCIYNTTYLNVQreNGTISRYvggqEHFAHLLILRDtkTYMLAFDvnd--------------ekNWGLS 125 human
Q3SZR3        88 ---------edKCVYNCSFIKIYrqNGTLSKVesdrEHFVDLLLSKHfrTFMLAASwng--------------tkNVGVS 144 cattle
ELK08232      99 fppflpglsenQCIYNTSNLKIQweNGTFSKYeageEVTGYLLFTKDpgIFMIVNYpedkqnmglslnaplesssAPLLP 178 black flying fox
XP_003479196  87 ---------hdHCIQNSTLLTVQrnNGTLARTvkneLHLAHLLLLRDphSFMLGFYlnd--------------eqNVGLA 143 domestic guinea...
EGW06649      87 ---------edRCVYNSSKLGVQreNGTISKYeglvEHVAHLKVFMKhkGFFLTFFped--------------ekNWGLS 143 Chinese hamster
XP_001508942  87 ---------agKCIFNSTYLTVCraNGTLSRPdattVHVAHLVLPPTpkTFMMLFHpee--------------erNKGLA 143 platypus
XP_001488181  87 ---------gnKCVYNFSILTVQreNGTITTNemgrEHIGHVWFTKDpsIILFVYFpdd--------------kqKIALF 143 horse
112881        88 ---------ddQCVYNFTHLGVQreNGTLSKCagavKIFAHLIVLKKhgTFMLAFNlt---------------deNRGLS 143 Norway rat
Q60590        88 ---------gdQCVYNSTHLGFQreNGTFSKYeggvETFAHLIVLRKhgAFMLAFDlkd--------------ekKRGLS 144 house mouse
ELK26647      86 ---------gdQCLYNSSSVTVHreNGTLSKSg--rGTVGLYPALPT--LLPPTHTqtf--------------spAPLLH 138 Myotis davidii
Feature 1         #                                                
3KQ0_A       126 VYADKpettKEQLGEFYEALDCLRipksDVVYTDWkkdkCEPLEKQHEKE 175 human
Q3SZR3       145 FYADKpevtQEQKKEFLDVIKCIGiqesEIIYTDEkkdaCGPLEKQHEEE 194 cattle
ELK08232     179 QTVDKpvatQEQMREFYETITCMGmdksEIMYTDEkkdqCGPLEKEQEER 228 black flying fox
XP_003479196 144 LHTDKpeatPEQLDEFREAIKCVGlstsEILYVDWkknkCELPEQQETKG 193 domestic guinea pig
EGW06649     144 FYANKpdfaPEFFTVFQESVKGLGmnesEIVYTDWkk-vNEETGYCHPGV 192 Chinese hamster
XP_001508942 144 FYADRqqatQEQLKEFLSAVKCMGfrndEIMYTDGskdaCQVLEKEHKKK 193 platypus
XP_001488181 144 FCADKanvtEEQMREFHEAIVCVGmdksEIMYTDEkqdqCGPLEKQHEEE 193 horse
112881       144 FYAKKpdlsPELRKIFQQAVKDVGmdesEIVFVDWtkdkCSEQQKQQLEL 193 Norway rat
Q60590       145 LYAKRpditPELREVFQKAVTHVGmdesEIIFVDWkkdrCGQQEKKQLEL 194 house mouse
ELK26647     139 PAVDKpeatPEQMQQFYDYLTCMGmdksEVMYTDRpgpsTLFVCFLLNLT 188 Myotis davidii

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