3F6Q,3IXE,2KBX


Conserved Protein Domain Family
LIM1_PINCH

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cd09331: LIM1_PINCH 
Click on image for an interactive view with Cn3D
The first LIM domain of protein PINCH
The first LIM domain of paxillin: Paxillin is an adaptor protein, which recruits key components of the signal-transduction machinery to specific sub-cellular locations to respond to environmental changes rapidly. The C-terminal region of paxillin contains four LIM domains which target paxillin to focal adhesions, presumably through a direct association with the cytoplasmic tail of beta-integrin. The N-terminal of paxillin is leucine-rich LD-motifs. Paxillin is found at the interface between the plasma membrane and the actin cytoskeleton. The binding partners of paxillin are diverse and include protein tyrosine kinases, such as Src and FAK, structural proteins, such as vinculin and actopaxin, and regulators of actin organization. Paxillin recruits these proteins to their function sites to control the dynamic changes in cell adhesion, cytoskeletal reorganization and gene expression. LIM domains are 50-60 amino acids in size and share two characteristic zinc finger motifs. The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. LIM domains function as adaptors or scaffolds to support the assembly of multimeric protein complexes.
Statistics
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PSSM-Id: 188717
Aligned: 24 rows
Threshold Bit Score: 88.9288
Created: 23-Apr-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding siteILK binding
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:3F6Q_B: Human Pinch1 LIM1 domain binds Zn
  • Comment: The two zinc fingers contain eight conserved residues, mostly cysteines and histidines, which coordinately bond to two zinc atoms. The Zn binding residues of LIM domain are highly conserved.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #  #                  #  #  #  #                 #  #      
3F6Q_B        14 CERCKGGFApaekiVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72  human
P50464        21 CVRCNDGFSmqdqmVNSSGQVWHSECFVCAQCFEPFPDGIYFEYEGRKYCEHDFHVLFS 79  nematode
XP_002406849 140 CTRCGDGFEphekiVNSHGEVWHQACFVCCQCFRPFPDGIFYEFEGRKYCEHDFHVLFA 198 black-legged tick
XP_793010     14 CVRCHTGFRqderiVNSHGEVWHEQCFVCAQCFRPFPEGVFFEFEGRKYCEHDFHVLFA 72  purple urchin
AAX26687      33 CKRCDEPFTedeniVSVKEGTYHPTCFVCAQCFQPLPNKEFYEFEGRRYCKYDFQVLFA 91  Schistosoma japonicum
NP_502440     20 CERCREQFElnepyFLLGASSWHMRCFLCAQCMDPLVGTTYFQFENRIYCEHDFKTLYA 78  nematode
NP_731242     21 CTRCADGFEptekiVNSNGELWHTQCFVCAQCFRPFQDGIFYEFEGRKYCERDFHVLFA 79  fruit fly
CAD38262       7 CTLCQDPFGrdeniVNSGGQVWHENCFVCVQCFQPFPDGVFFEHEGRKYCEPDYQALFA 65  Suberites domuncula
XP_002108081   9 CAICRRKFDsnekaFTSSGKVYHEQCFICCQCLQPFPDGIFFEHEGRKYCDYDFRILFA 67  Trichoplax adhaerens
EFN69483      14 CSRCREGFVahekiVNSNGELWHPQCFVCAQCFRPFPDGIFYEFEGYKYCEHDFHVLFA 72  Camponotus floridanus

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