6GRK,6GRJ,6H2F


Conserved Protein Domain Family
ClyA_AhlB-like

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cd22652: ClyA_AhlB-like 
Click on image for an interactive view with Cn3D
Aeromonas hydrophila hemolytic component B (AhlB), and similar proteins
This model includes Aeromonas hydrophila hemolytic (Ahl) component B (AhlB) of the tripartite AhlABC toxin, a member of the cytolysin A (ClyA) family of alpha pore-forming toxins (alpha-PFTs). It consists of three proteins, AhlA, AhlB and AhlC, encoded by one operon containing the three genes. Functional and mutagenic studies support a model of pore assembly where the soluble tetrameric form of AhlC first disassociates into monomers, binds a single membrane leaflet, and then recruits AhlB to promote soluble to pore transition; AhlA then binds to form the active hydrophilic lined pore. The structure of AhlB shows an elongated, almost entirely alpha-helical protein, including a hydrophobic beta-hairpin known as a beta-tongue to shield membrane inserting hydrophobic residues. The head domain of AhlB undergoes a large conformational change involving the beta tongue becoming an extended alpha helix, and the tail domain helices sliding relative to one another as AhlB assembles into a hydrophobic pore.
Statistics
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PSSM-Id: 439150
Aligned: 38 rows
Threshold Bit Score: 256.765
Created: 29-Sep-2020
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
oligomer
Conserved site includes 75 residues -Click on image for an interactive view with Cn3D
Feature 1:oligomer interface [polypeptide binding site]
Evidence:
  • Comment:each of the subunit conformations of AhlB pack together to form a dimer and five of these Type 1/Type 2 dimers assemble into the decameric oligomer
  • Comment:Other three-component toxins of ClyA family alpha-PFTs include Bacillus cereus Non hemolytic enterotoxin (Nhe) and Hemolysin BL (Hbl). Pore-formation by the Nhe toxin follows a pattern involving membrane binding, oligomerization and finally insertion of the transmembrane regions to form the pore.
  • Structure:6GRJ: Aeromonas hydrophila AhlB toxin interacts with neighboring molecules of a decameric assembly; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #   #   #  #   # #   #  ####                                 ##  ##  ##  #   #  
6GRK_A         7 ITMDQGMANQASQAMQIQTYCNSVKQQVpvdf--sqfpNLKDNQTQINQGLDLAKGHADLYLNTIQPQIITNISNISNYF 84  Aeromonas hydro...
6GRJ_A         7 ITXDQGXANQASQAXQIQTYCNSVKQQVpvdf--sqfpNLKDNQTQINQGLDLAKGHADLYLNTIQPQIITNISNISNYF 84  Aeromonas hydro...
WP_014193334  16 DGQREKVKEQAAAGLILQAHCMSVEAQPlvsf--egveKLEAVKVRANNALGVAKAHARNYLDVIQPRIITTFTSIEEYF 93  Burkholderia sp...
WP_034263838  11 RIAGSAVARVAAHTLILQGFALSMQEQRgvgf---ssgQLAPYAAAINDAVRAAGEVSFACLNTAVPTAARTITGFTEYF 87  Actinospica rob...
SCG04400      13 EEIGGEVAVQGALTALVQTHALSIMQQPkpdfsgidneEIRSFQGTVQGALNNAAENAGHYLWTVQPESIALLSRVENYF 92  Streptomyces sp...
SDP11449      16 SLLAKSVAEQNVKSLQVQRYAVAVQQQPradfg-tadkRLTERARLINRELESANRAVAHYLAEVQPVSLRLVTDAQAYF 94  Streptomyces gu...
WP_119825413  13 MRIGQGAAAQGSLTALVQAYAMSVMQQPrpdfsrisneEVRAQQGPARRALDNAANSSRKYLNVVMPESLDVLQKVENYY 92  Streptomyces ca...
WP_126916834  13 QQLGNAVVQQGGMTAIVQSYALSVTQQArldlsrsdnsQIRAYAAGINQELDRAANTARTYLNNVQPQSMALLAETRSYF 92  Streptomyces lu...
VVM65700      14 GQTSIALKGQSSAAMLVQAHCLGVQNQMfldf--gkqdGLKTLQNEINSGLVKAKQSAVYYLDDLQPRIITTVTNIEAFF 91  Pseudomonas flu...
WP_013762696  20 KDLREAVLGSGSAGLVVQTYANTILQQPdit-----lpADLLAKIPVDVFLKTARTHADNYLNNIQPGIINTIQDVNGYS 94  Haliscomenobact...
Feature 1        ##  ##  #                  #  ##  #   #                                    #    
6GRK_A        85 ALQNAIPAVLPPgs----------tkAQWLRQLSVIKEQATEYQRLSSDTRLVIVNLNNNLITDSSNFQGIVVNLNSKVq 154 Aeromonas hydro...
6GRJ_A        85 ALQNAIPAVLPPgs----------tkAQWLRQLSVIKEQATEYQRLSSDTRLVIVNLNNNLITDSSNFQGIVVNLNSKVq 154 Aeromonas hydro...
WP_014193334  94 LLQRTVTEALADiq----------srEDAKTIIRLLQERVAEFKSQSVSNRTALETLRTNLAEDQSAFKGITIELTGLLe 163 Burkholderia sp...
WP_034263838  88 QTQSYLAGALQQds----------dvAAAIALLTAVQEQVASFNEQAVGLADGLRNLRARFVQSLADMDKAAAGLAVAAd 157 Actinospica rob...
SCG04400      93 VTLGALSESLKDeq----------dpDAMVQTLRYLREQAGEFTDQTRKVASSTDSMVSAFSGDKREFTECAAKINTLVg 162 Streptomyces sp...
SDP11449      95 ALQDNVLASLTGmr-----------tETAIRMIDVLERKTREYSREADAVSREIGKSQSTFSENAKEFREHAGEINKFVs 163 Streptomyces gu...
WP_119825413  93 LTLGSFTESIKDed----------dpVALAETLRDLRDEAGSLMDATKASTASMTGIVSSFNSDKQSFDECAVKINSLLd 162 Streptomyces ca...
WP_126916834  93 ALQGAFVDILQQnl----------ppNTVAQLLRAIRDDVGRLRDKAQQHATSMQGMRDAFGANGREFASYATKLHSVVg 162 Streptomyces lu...
VVM65700      92 ELHNVLPQILLPgt----------ttADAIAMLREMESSVEVYRRQASVIQTDLSKIRTGFSDDKAFFDRCTLDLSALLn 161 Pseudomonas flu...
WP_013762696  95 TQFSSFNKVISQsintwkmgnnltakQEALDLLKQLQIGLTSKQNKVILVSKDLGKLLLDLNGDVANFTTAVSTADIEIg 174 Haliscomenobact...
Feature 1         #    #  ##  #  ## ### ##  ## # #    ##  #   #             #  ##  #    ##       
6GRK_A       155 gDNGVLAQLNGDIDKVNAAIDGAIAGIVAGGLLvigGAFVTAIGAVADfvtagtSTPVVIGGVAMMVagagGITAGAIVL 234 Aeromonas hydro...
6GRJ_A       155 gDNGVLAQLNGDIDKVNAAIDGAIAGIVAGGLLvigGAFVTAIGAVADfvtagtSTPVVIGGVAXXVagagGITAGAIVL 234 Aeromonas hydro...
WP_014193334 164 gDKGVLADITGQLSSIDGKIAGAAVGVALGGLAviaGGIMFVVGAFTSfvtggaAVALCVAGGAVIGtgaaAVAGSSIAL 243 Burkholderia sp...
WP_034263838 158 gNDGALRSIGAELRDIDDRIHRALTEVVESGLAdpeGGIRIGVGALAEpavagaSMAVVVGGVAIAAig-gSGDDVSRPL 236 Actinospica rob...
SCG04400     163 gESGILGDLKRDLENVNSKITAATIGAGVSGAAilgGVACIVIGCCTSiftggtSLAVAIGGGVLLLggigGGIGSGIAL 242 Streptomyces sp...
SDP11449     164 gDNGLLKTLQDDLDQVESSINHHWVGAGVSALAiggGIALIVIGSVGTlltgglATAAVVGGGALLLggigGAVGTGVGL 243 Streptomyces gu...
WP_119825413 163 gEKGALATLQKQLDDVNASITAASVAGAVGTGAaltGAAMIIVGCCTSiftgglSMAVAIGGGVLLIgglvGTGGSAIAL 242 Streptomyces ca...
WP_126916834 163 gDQGILKQLDDQLKQVNAQIQANSSRAANGLAIl-gGLALIAVGVLGAvftgglSLGLAIGGGALLVk--gMGRTNGQAL 239 Streptomyces lu...
VVM65700     162 gDKGVLESINSELSGINGKIAGVATGIALSGLAaigGVVLLLIGAVGSvvtgglATALCVGGSALLIggvaGAVGSSIAL 241 Pseudomonas flu...
WP_013762696 175 aDSKVIGDLENTISSFDSKIAGAASGVALSGLVaigGGLLIVVGAGLTpftfgaSTGLIVAGAAVVVvgagGLTASSVVL 254 Haliscomenobact...
Feature 1           #  ##  ##          #        ##  ##  #  #   #                                 
6GRK_A       235 HNSLGARQDLYQKRsslnsEVLIATQIGNGYKGLQVQAQNAVTAATQMSNAWDSLTSDLGSLITDLDkgi-------tsg 307 Aeromonas hydro...
6GRJ_A       235 HNSLGARQDLYQKRsslnsEVLIATQIGNGYKGLQVQAQNAVTAATQXSNAWDSLTSDLGSLITDLDkgi-------tsg 307 Aeromonas hydro...
WP_014193334 244 GGLLNMKSDLLVREaklknEVKLVNGMMSGFGSLASSAAAAQDSAQSMANAWGFMGDHLESLYGNLDkgk-------tdn 316 Burkholderia sp...
WP_034263838 237 AEAMDAKSDLIAERarsnaETALAGGLVSGLKGLDWAASVAAAIAQTPVNAWTRIRDDLGALTAELKqgsttpqkvgnal 316 Actinospica rob...
SCG04400     243 ANLYDEKRNLLVKQerlesGVKLLTACSAGLADLGTQAGGVATALQNTTNSWTFLKESLNSAADNIEkagr------aqs 316 Streptomyces sp...
SDP11449     244 ANLYQQKRNLLEEQarlrqEVKLLTDCSTGLTGLETAAEAAAVEAQSAKNAWDIVGGHLASLSSTLRdakd-----psfe 318 Streptomyces gu...
WP_119825413 243 ANLHDQKRRLLDDQkqlegTVRMMTTCGAGLADLGTQAGGAATALQNNTNSWTMLTQSLNSAANNIEkagr------aek 316 Streptomyces ca...
WP_126916834 240 AQLHDQRGEILRRQqrirdEVKLLQACEAGLTSLGKQAHEAAAAAQSVANGWDSLKASLGSVADYVDrgsq------tnv 313 Streptomyces lu...
VVM65700     242 AGLLNLKTDLITRRerlnaEVAVATGLASGLGELAVSASQAQESAQLMANAWGFMGSHLEMLRDQLKrgq-------ids 314 Pseudomonas flu...
WP_013762696 255 SSLISGKSDAIRQKailtdDLNALHLLKPAFVNLQSSASNAIAQVNNMANAWNILGGNLGNVIGSISdaqt-----fsdl 329 Haliscomenobact...
Feature 1                    ##           #  ###
6GRK_A       308 DDIRQLWLTAADTTVKTVLTDVTTIKAQMAG 338 Aeromonas hydrophila
6GRJ_A       308 DDIRQLWLTAADTTVKTVLTDVTTIKAQIAG 338 Aeromonas hydrophila
WP_014193334 317 AMLRKIFLAAAEKSVAPIERDVAIIRDQMTA 347 Burkholderia sp. YI23
WP_034263838 317 ALAAPGGAGAVPSEIHRVLDQVITVDPVMDL 347 Actinospica robiniae
SCG04400     317 DFLRKTFLRTIDRSLPRNLEQLRNTRKALIG 347 Streptomyces sp. Ncost-T6T-2b
SDP11449     319 EDIRRVFVETARTNLSDTQNGLRGVQRLMTP 349 Streptomyces guanduensis
WP_119825413 317 KSTRDRWVKTVERSAPRTLEQLKETRQAIMG 347 Streptomyces cavourensis
WP_126916834 314 AVLRELYLRAADGVTPDILNKVSAMENNLTT 344 Streptomyces luteoverticillatus
VVM65700     315 PMLRQLLIRASQGGVRLIQADTDTIKRQMTT 345 Pseudomonas fluorescens
WP_013762696 330 PVVVQAYLDTANDQWADVKTAVQTINQQMTG 360 Haliscomenobacter hydrossis

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