Conserved Protein Domain Family
PT_UbiA_1

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cd13964: PT_UbiA_1 
UbiA family of prenyltransferases (PTases), Unknown subgroup
Many characterized members of the UbiA prenyltransferase family are aromatic prenyltransferases and play an important role in the biosynthesis of heme, chlorophyll, vitamin E, and vitamin K. They contain two copies of a motif similar to the active site DxxD motif of trans-prenyltransferases and are potentially related. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways. The function of this subgroup is unknown.
Statistics
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PSSM-Id: 260127
Aligned: 64 rows
Threshold Bit Score: 165.061
Created: 5-Mar-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative active
Feature 1: putative active site [active site], 4 residue positions
Conserved feature residue pattern:n d d dClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on homology modeling using structures of trans prenyltransferases that are helical enzymes containing two D-rich motifs in the active site
  • Comment:only one motif seems to be conserved

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                              ##  #   # 
YP_003385025   5 LLSLTRPANLVTSVADVLAGMAIAGyfgvydp----------------apapvgwLCLATVGLYGGGVvFNDVFDAELDa 68  Spirosoma lingu...
EDY84847       7 HLTLARASNLPTVWSNILCAWIIVGgydpl---------------------qlaaLLVGASLLYTGGMyLNDYCDREFDa 65  Verrucomicrobia...
EHR70328       6 ALRLGRISNLPTVWTNVMVGALLAGaglgd--------------------arlllLMGALSLFYVGGMfLNDAFDREFDa 65  Burkholderiales...
BAI75242      14 ALILGRVSNLPTVLSNAIAGIALAGvgmaggd----------------ilggiarAAIVLALFYVGGMyLNDAFDAEIDa 77  Azospirillum sp...
EDM79502     424 ASKLGRVSNLPTVWSNVLAGYVLAGgqlap--------------------rplvlLGLMGSAFYIGGMfLNDVFDVEYDl 483 Plesiocystis pa...
AFZ66813      17 HLALARISNSPTVVTNVLAGAALGGslgms--------------------qqgafVAVAMVLFYTAGMyLNDLLDLEIDr 76  Deinococcus per...
ABF43904      17 HLSLARVSNSPTVVSNVLAGAALAGgagl----------------------plvlLAAAMLLFYTAGMyLNDLLDLRTDr 74  Deinococcus geo...
ADI14025      14 HLALARLSNSPTVVSNALAGAALAGalsaarap--------------talgalviLSAAMVLFYTAGMyLNDLFDLEHDr 79  Truepera radiov...
ABX04200      12 YLELMRISNNPTVISNTLAGVALAGvslgd--------------------wrvwlLALAFSLFYSAGMvFNDWCDYAIDq 71  Herpetosiphon a...
ACR13998       6 IMQLGRIPNLPTVWTNTLAGMALVGglgagalsnsalsndvlkvsvqndgvqialTLAALSLFYLAGMfLNDAFDAEWDr 85  Teredinibacter ...
Feature 1                                                                                        
YP_003385025  69 vERPERPIPSGVVPKstAALLGTVLf--MMGIAASf--------AVNQTAGLLAIg--------iTVASLVYDKFGKHHn 130 Spirosoma lingu...
EDY84847      66 eHRPERPIPAGLVAAtqVQKTSIALlalGFATIAAptllqspftAASLLPAAFAAg--------lVAAIVIYDLHHKGNa 137 Verrucomicrobia...
EHR70328      66 rHRPERPIPSGQVSAqqVFAIGFGLl--ALGQAGVa--------LATAQAAGVAAwpalvsglllAAAIVLYDAHHKGNp 135 Burkholderiales...
BAI75242      78 rERPARPIPKGDASRavVFAAGFVMi--GLGVALTa--------AIGPAAGVSGAl--------lAGTILLYDILHKRTa 139 Azospirillum sp...
EDM79502     484 rERPERPIPAGEVERdeVLRWAAALi--AGGLWLAw--------QLGLAVLLAALa--------tVAFIVLYNRNHKGNp 545 Plesiocystis pa...
AFZ66813      77 rERPTRPLPSGLIGQaeALGVTLLLf--VLGSLLLw--------TAGTAALVSGLv--------lIALIVLYDAWHKTNp 138 Deinococcus per...
ABF43904      75 rERPERPLPSGLILPgeAWVVTAGLf--GLGGWLLw--------LAGGAAFLSGLv--------lLGLIVLYDAWHKTNp 136 Deinococcus geo...
ADI14025      80 rERPERPLPAGAVSRreALTATVLLf--AAGTFLLs--------LLGAAPLASGLv--------lLALIVLYDAWHKTNp 141 Truepera radiov...
ABX04200      72 rERPERPLPSGRVSRnaALVLTIGLf--GIGLACVa--------LVSWQGLLWAGg--------lVGLIVVYDLWHKTNp 133 Herpetosiphon a...
ACR13998      86 aHKQDRPIVRGDVSVteVAFYACGFv--ALALVLLwfa---andGQQWLPIVSASg--------lLAAILLYNARHKQWp 152 Teredinibacter ...
Feature 1                                                                                        
YP_003385025 131 lLGPVNMGLCRGLNLLLGIsii------pdqVMPWAWVGLVPIaYIAAITMISRGEVHGGSPTTLRfa-------giLYA 197 Spirosoma lingu...
EDY84847     138 -AAPIFMAACRALLYLAVAsafe-----ngiDTNNLIATGTIFtFILGVTYLARSESTTNAIDYPA-----------LAT 200 Verrucomicrobia...
EHR70328     136 -LSPLVMGLCRVLVVTTAAlvwv-----pplPTPVLLAALALLcHLIGLTYIAKQEHLDRIGALWPla-------flAVP 202 Burkholderiales...
BAI75242     140 -AAPAIMGLCRLLSYTTAAtvaggsagggalAPWMLLGAGGLFcHVVGLTFAARQEAYDRLDTAWPlg-------vlALP 211 Azospirillum sp...
EDM79502     546 -AAPVLMAMCRVGLYACAGaaagta-tdpgsIGALGLGALVLAgYVLGLTYAARYEDSSALVRVGPlv-------gvAGP 616 Plesiocystis pa...
AFZ66813     139 -LSPVLMAGTRMLVYVTAFlaft-----agfTTPLLVWTGLLGaYIVGLTYIAKTETKENLARYWPal-------liFLP 205 Deinococcus per...
ABF43904     137 -LSPLVMGLTRALVYVTAAfafv-----shlSSSLLIWSALLTlYVAGLTYVAKTEHRSGPARFWPva-------lvLAP 203 Deinococcus geo...
ADI14025     142 -LSPLLMAATRAMVYVTAFlalrptvppdgmVARMVLWALLLGlYIVGLTTIAKTETRTLTGYWPAal--------lFLP 212 Truepera radiov...
ABX04200     134 -ISPVLMASTRILVYLSTIaalg-----aafSWQVWLAVGLLFsYVMGFTFIAKSELRPQLKALWPa---------iCVL 198 Herpetosiphon a...
ACR13998     153 -HAAWMMGSCRLLVYITAAsvia-----tpnTAVLVAGAALLV-YIAGITYLARSEHVNSLESRWPivlllcpsgfiLFL 225 Teredinibacter ...
Feature 1                                                                                        
YP_003385025 198 LVIGCLAALAqrqqq-lgtaLPFLLLFGYYIFPPLWravkep-vgrnigLAVRAGVLSlIVMNAAWVAAFASfp----lA 271 Spirosoma lingu...
EDY84847     201 IGAPILGAFYynrhgfdaqqTAILALFLVWQARTFLrarvdg--qlvigKTIGPLLAS-IPLLDLLILSTLSlat-qthL 276 Verrucomicrobia...
EHR70328     203 LLYGLSLALAap------waWLPLLPYAGVLVFALGrlrrra--pgdvpRAVVSLIAGmSLLDAVLLAGAGQtt----aA 270 Burkholderiales...
BAI75242     212 LVGSLWVALGsp------aaLGLWTALAAATGWALHrlfrrv--pgdvpRAVAMLIAAiALYDAVLVAAAGSag---plA 280 Azospirillum sp...
EDM79502     617 LAVYGSVFLQgp------lgVALVVGFGLWLARALRlvrgqr--pgsirSGVIALIAGiAWVDALALASVAGtgvglpmA 688 Plesiocystis pa...
AFZ66813     206 AVYFVFTGPSl---------VGWALLLAFVAWAAFSvtfvydrrkrsigRAVVSLIAGvSLLDALVLASQGAsn----lI 272 Deinococcus per...
ABF43904     204 AVYAYVGGFAwp-------vWMLALLLAAWVGRSLTfvygp---qrnigGAVGRMIAGiSLLDALVLGGAGAwa----lL 269 Deinococcus geo...
ADI14025     213 ILFAAPLLPWt--------lLWLPLAFALWLAYSLSfvyap---arqvgRATAQLIAGvSLLDALVLGLFGTlg----gV 277 Truepera radiov...
ABX04200     199 LPIGYALITPdfspilvsvaLLSWSLHSIRLVYRQRqi----------gPAIGRLIAGiSLFDALVCIVAGNlw----aC 264 Herpetosiphon a...
ACR13998     226 LCVGYFDFLAaaa----allTLLWIAHGIRYLMPGArrn--------ipQAVGILLSGmCLIDTSLLLVLGQtq----iA 289 Teredinibacter ...
Feature 1                         
YP_003385025 272 MLVFCLLPLSRLLAKVF 288 Spirosoma linguale DSM 74
EDY84847     277 IIFATLFALTTATQRLI 293 Verrucomicrobiae bacterium DG1235
EHR70328     271 LLAMAAFGLTLALQKWV 287 Burkholderiales bacterium JOSHI_001
BAI75242     281 LVAALCFPATLALQRIV 297 Azospirillum sp. B510
EDM79502     689 LGALAAFMATLALQRLV 705 Plesiocystis pacifica SIR-1
AFZ66813     273 PLALLAFALTLFLQRFI 289 Deinococcus peraridilitoris DSM 19664
ABF43904     270 PWALAAFALTRWWQRHI 286 Deinococcus geothermalis DSM 11300
ADI14025     278 WAALVAFGATLALQRYI 294 Truepera radiovictrix DSM 17093
ABX04200     265 AFAIAAFGLTRLAQRSI 281 Herpetosiphon aurantiacus ATCC 23779
ACR13998     290 LFTACCFAAGIFLQKWY 306 Teredinibacter turnerae T7902

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