1DEO


Conserved Protein Domain Family
Rhamnogalacturan_acetylesterase_like

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cd01821: Rhamnogalacturan_acetylesterase_like 
Click on image for an interactive view with Cn3D
Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Statistics
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PSSM-Id: 238859
Aligned: 44 rows
Threshold Bit Score: 187.805
Created: 30-Oct-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitecatalytic triad
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:the active site resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases
  • Structure:1DEO, Aspergillus aculeatus rhamnogalacturonan acetylesterase binds sulfate, contacts at 3.5A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #                                   #                                   
1DEO_A        1 TTVYLAGDSTMAKNgggsgtNGWGEYLASYLs---ATVVNDAVAGRSARSYTREGRFENIADvvt--------------- 62  Aspergillus acul...
ZP_00523060  21 VKIVLVGDSTVNDE------GGWGPGLRASFgp-gVQVVNLAQNGRSSKSFRDEGWWAKVAPak---------------- 77  Solibacter usita...
AAK22797     28 SKIVLVGDSTVAVN------SGWGGAFCATHvtsnIACVNLGRGGRSSRTYREEGSWALALKemsag------------- 88  Caulobacter cres...
AAM39461     40 SKIVLVGDSTTAVQ------GGWGPSFCAQHvtsfLSCLNLARGGRSTSNYRAEGSWEIALKelrsg------------- 100 Xanthomonas camp...
CAD73312     68 ITIALIGDSTVEDY------SGWGVAFETRFnn-qVKVINFAKGGASSKSWYDGNRMPAVLDak---------------- 124 Rhodopirellula b...
EAA63405     29 PAFFLAGDSTTAPN------GGWGDAFVSSLtg-gSTGQNFGDSGATTFSFRNEGFWAEVLEaveta------------- 88  Aspergillus nidu...
EAA78593     28 PRFFLIGDSTVAVN------GGWGDGLLSYLka-pTEGDNRGVSGSTTVSWKFSGRWDTLIRdissa------------- 87  Gibberella zeae ...
EAQ91555     29 AAFFLAGDSTTAVN------GGWGDGFVAILqn-gAIGKNKGHSGATTASFVAGGDWGKVLDlvksn------------- 88  Chaetomium globo...
EAT89711     45 VYWLLAGDSTTAAG------GGWGDAFLSTTvapgSSGRNWAKGGATTKSFRDGGYWASVLKgiaqfkadnrvyvtiqvr 118 Phaeosphaeria no...
ZP_01089734  29 LTIGLIGDSTVAST------YGWGPSFAEMVte-rTKVLNYARNGATLQSLSKKLDELLRQQp----------------- 84  Blastopirellula ...
Feature 1                        #                                                              
1DEO_A       63 ------agDYVIVEFGHNDggslstdngrtdcsgtgaevcysvydgvnetilTFPAYLENAAKLFtakgAKVILSSQTPn 136 Aspergillus acul...
ZP_00523060  78 -------pNFVLIQFGHNDvagkgpe-------------------retdpatTYRANMERYVEEVramgATPVLVTSIVr 131 Solibacter usita...
AAK22797     89 ----gfdqTFVLIQLGHNDqpgrper--------------------stdlatEFPANLRRFVEEAraagAKPVLVTPLIr 144 Caulobacter cres...
AAM39461    101 ----gyrqVVVLIQFGHNDqpgkpgr--------------------stdlatEFPANLRRYVNDAraagALPVLVTPLTr 156 Xanthomonas camp...
CAD73312    125 -------pDYVLIQFGHNDqpgkgpk-------------------retdpatTYRQQLKRYVAEVkaigAVPVIVSSVTr 178 Rhodopirellula b...
EAA63405     89 ---sgsytPYVTIQFGHNDqkte-------------------------sglaAFKDNLVQFDADVrgagGIPIFLTSLTr 140 Aspergillus nidu...
EAA78593     88 ---kgdfePVVTIQFGHNDqkvm--------------------------qldEFHSNLINIGNDIkkagGTPIFITSLTr 138 Gibberella zeae ...
EAQ91555     89 ---kdkydCYVTIQFGHNDqksts-----------------------gvsisAFQTNLQNMANQVktagGIPVILTSLTr 142 Chaetomium globo...
EAT89711    119 nvsrqssfCTDKQQFGHNDqkens-----------------------gvsitQYATNLGVMADEVvkagAIPILVTPLTr 175 Phaeosphaeria no...
ZP_01089734  85 --------DYVLIQFGHNDqkry--------------------------dttVYGAELTSYVERVkkagGKPIVLSSVTr 130 Blastopirellula ...
Feature 1                                                                                       
1DEO_A      137 npwetgt----------fvnsptrFVEYAELAAEVAGVEYVDHWSYVDSIYETLGNAtvns------------------- 187 Aspergillus acul...
ZP_00523060 132 rnfdsqgk--------fqpdtlvpYAEAVRRLAVEREVALIDLYTLTREQAERLGPAgseqlgr---------------- 187 Solibacter usita...
AAK22797    145 rqfkdgq----------vyddlapWAQAIRKLAAETNTPLVDLHALSRDAVQAMGPVaamrlaeippppevaasaasgtt 214 Caulobacter cres...
AAM39461    157 rqfergq----------liddlapWAAATRAVARELQVPLIDLHARSRALVQGMGPVlamrlaqqpaepaqlvaaqsgtt 226 Xanthomonas camp...
CAD73312    179 rrfdehd---------qirttlgpWAVAAKEVASELEVPFVDLHNRSIELHNKIGPAasmef------------------ 231 Rhodopirellula b...
EAA63405    141 rnfgddg---------lvkddlenVRNLTIEAATETGTLWANLNVASREYVNEIGEEdshty------------------ 193 Aspergillus nidu...
EAA78593    139 rtfsggq----------vvenlkdWAAETIAAAGDVGAEYLELNKASTDYVNAIGAQnadsy------------------ 190 Gibberella zeae ...
EAQ91555    143 rtftngq----------lddslanVSEAAKKAAAAVGVAFLDLNAASKKYVQAIGSSnadky------------------ 194 Chaetomium globo...
EAT89711    176 rtfsggk----------vtenlsnETKKTQEVAKGRSLHTIDLNKASTAYVNAIGSAaadky------------------ 227 Phaeosphaeria no...
ZP_01089734 131 rgfdendlilprsgkdvlkatlpfYAQAAKAVAQQQNVPFLDLYTISVAHHNKIGPTesaay------------------ 192 Blastopirellula ...
Feature 1                                                      #                 
1DEO_A      188 ----------------------------------------yfpiDHTHTSPAGAEVVAEAFLKAV 212 Aspergillus aculeatus
ZP_00523060 188 -------------------------------------kdpegrpDHTHLGPKGQTEIGIMAAREL 215 Solibacter usitatus Ellin6076
AAK22797    215 tgamfye-------pvlpgavapprppspppsppgamgsfkpvfDYTHLGPEGAALFSAMVARAL 272 Caulobacter crescentus CB15
AAM39461    227 igktpaqtvapssapasvaktttavataqdnasaepmgqaklafDYTHLGADGADLFAAIVADEL 291 Xanthomonas campestris pv. camp...
CAD73312    232 ---------------------------------------nfkegDLTHFNEKGGEVMADLVIKEL 257 Rhodopirellula baltica SH 1
EAA63405    194 ---------------------------------------nlsegDNTHLNEEGGVVFAGVVGILL 219 Aspergillus nidulans FGSC A4
EAA78593    191 ---------------------------------------nwgpgDRTHLNPSGEIVFGRMVLDLL 216 Gibberella zeae PH-1
EAQ91555    195 ---------------------------------------nlaqgDRTHLNPHGTDVFGRMVADLI 220 Chaetomium globosum CBS 148.51
EAT89711    228 ---------------------------------------nlasgDRTHVNEHGGVVFARIVSDLL 253 Phaeosphaeria nodorum SN15
ZP_01089734 193 ---------------------------------------nptetDITHFTKQGADAIAGLVVAEL 218 Blastopirellula marina DSM 3645

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