Conserved Protein Domain Family
HTH_28

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pfam13518: HTH_28 
Helix-turn-helix domain
This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.
Statistics
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PSSM-Id: 463908
Aligned: 75 rows
Threshold Bit Score: 30.2528
Created: 25-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q5YMP9                 25 QRAEVIGRLA-QGDrvSVAAadeAAAELGV-TQ-RQVYALVKRWRAgEGVAsDLLPR-RS-SGG 83  Nocardia farcinica
A0BJ93                 15 IRVQLLKRIL-SKEa-TIKE---AAKEFGV-NF-STAKAILQTYRK-EGRI-GKKKT-RD-RNK 67  Paramecium tetraurelia
A0E9D5                 10 TRLAFINKVQ-QGVc-TIKQ---AAKQFGI-KF-STGKAILSLYKH-EGRV-GKKQK-RI-RKI 62  Paramecium tetraurelia
Q3HKD4                 12 NRIEILSKVL-DRRm-TTTE---ASVLLAI-GP-RQVQRLLRRLRE-DGAA-ATRHGlRG-RPS 65  Rhodobacter sphaeroide...
CAV18618               19 HRFKVLTDVR-EKRl-RQVD---AAIILNL-SA-RHIRRLVNKLVS-LGAQ-SLTHA-ARgRPS 72 
wugsc:KPN_pKPN3p05906  11 SRINIIQSVV-EKRm-RRRD---AAHQLAL-TE-RQTQRLMNRFRE-SGAA-GLANL-RRgRPG 64 
jgi:Daud_1862           7 RRLGIMERVL-AGKv-SIRQ---AAVLLGL-SE-RQVMRLKKGMKQ-EGEA-FLVHK-NR-GRK 59 
Q92VY1                 63 FKLSVLKRMWeDGL--SCRQ---TAALFNIrNA-GCLSDWERRYEI-GGID-ALAPR-RRgRPR 117 Sinorhizobium meliloti
CAL60719               63 FRLRVLRQMWkKQW--SYQE---TGLAFGIrSQ-GCVAVWERCYHN-GGID-ALQPR-KRgRPP 117
Q8XG34                 63 FKLTVLQRMW-RDEl-SYQQ---VSAVFDL-REaGGVSRWDRQYHE-GGFD-ALQPR-RK-GGa 116 Ralstonia solanacearum
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