3F6N


Conserved Protein Domain Family
Cauli_DNA-bind
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pfam03310: Cauli_DNA-bind 
Caulimovirus DNA-binding protein
The gene III product of cauliflower mosaic virus (CaMV) is known as virion-associated protein or P3, which is tightly associated with the virus particles and has a regulatory function in the virus infection cycle. P3 decorate the virions; its N-terminal domain forms an antiparallel alpha-helical coiled-coil network at the surface and the C-terminal domain interacts with the C-terminal half of the coat protein. It is a DNA binding protein in which the DNA binding activity is located on its C-terminal part.
Links
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Statistics
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PSSM-Id: 460882
Aligned: 13 rows
Threshold Bit Score: 96.7941
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
3F6N_A         8 QKEVSEILSDQKSMKADik---aiLELLGSQNPIKESLETVAAKIVNDLTKLIND-----------CPCNKEILEALGTQ 73 
YP_001931959   6 LKEIHDLIIQVLEEIKS-------LKKDINDYSKDSNNEAIAAKIITDIAEQIKK-----------CPCNKEILDVLKNS 67 
AMN10078       8 SKDLENIVIPILKEIKE-------MLNSQKQDSIKELIEAASAKIIMEMKK---------------CPCNEEILAALNKQ 65 
P05398         7 ASEIEVVKTNQKTIESKid---qiLAKIGSTPDESSNLESVAAKIISDLTKEMKE-----------CHCNKEIVEILNk- 71  Carnation etche...
P03551         8 QKEVSEILSDQKSMKADik---aiLELLGSQNPIKESLETVAAKIVNDLTKLIND-----------CPCNKEILEALGTQ 73  Cauliflower mos...
Q5J1S3         8 QKEVSQALEEIRSLKKDte---aiLAKLGSTEP--NNLEAIAAKIINDVTKVIRD-----------CPCNKEILEAFAKQ 71  Horseradish lat...
AFP95348       3 LAEIQKAIDQVKRLAEQie---klLESSK------TIVEASSAKVIQDITSKLEE-----------CHCNKEILDALKSH 62 
YP_009165748   3 LKEVSEVLEKIKKLVEQte---alLEKSK------EIVEASAAKVINDITAKLEK-----------CQCNKEILDALKEI 62 
KAH0699180     2 DKKIDQILD---------------LLRNKPQSQEIEKMEQIAAKIITDIANKIDK-----------CECNKEITELLKNK 55 
P09522         5 LSEIRELIQSLTKTANEik---amLERNSAGKP--TGIEEAAAKIIKDIGDKIDQ-----------CECTKKIEEMLDQK 68  Figwort mosaic ...
Q8JTA4         4 ISELAVLIEELKKEVADlvttvkdLAKDKSPETDQNALKSLGAKIIKDISDKIDQ-----------CECTDKLFDRLKg- 71  Mirabilis mosai...
YP_001931965   8 GAKLDALSQKVNELLKE---------------KQVDKTESAAAKIIKDLSDRIEKdkqelisliksCPCGRHd------- 65 
Q7THB6         4 IKDLAALIEGLREEISKlk---aeITSKDTGPTDNTALESLGAKIIKELSDKMDK-----------CECTERLKKELQEQ 69  Dahlia mosaic v...

3F6N_A        74 p-------------KEQLIEQPKE-----KG--KGLNLGK----YSYPNYGVGNEELGSSGNPKALTWPFK 120
YP_001931959  68 k-------------DKQVIPHQGKp---dTSsdKPSSLQK----YSYPNFRVGNEELGESKNPDSLRWPEG 118
AMN10078      66 pe----------skDKQIVPFEEQs--------EKPRRML----YSFPNDSVGFEQLGTGKNKNSIVWPPQ 114
P05398        72 --------------DKAIIPSPEQ-----DSiqKRLSEPQ----YTFPNFDVGNEGMGSSTNPNALKWPPT 119 Carnation etched ring virus
P03551        74 p-------------KEQLIEQPKEk-------gKGLNLGK----YSYPNYGVGNEELGSSGNPKALTWPFK 120 Cauliflower mosaic virus...
Q5J1S3        72 pe-----------kKGEIIPSNKPg-------sSSSKLKK----YSYPNTGVGNSNLGSSENPKALTWPFG 120 Horseradish latent virus
AFP95348      63 dsk--------ekpETQIVNSDKSp--------STSSLQK----YSFPNEYVGNAELGSSGNPNAIVFPRR 113
YP_009165748  63 kge--------pskELAVTGKDDP-----KGksKSFPLEK----YSFPNYRVGNAELGSSGNPNAVVYPPE 116
KAH0699180    56 aginrsksagdlpkDDQIQKTPKE-----PEtkKPVQGWR----YKWPNYNVGNAELGSSGNPKAMRWPED 117
P09522        69 qn-----------aDTQIVPTKQE----------SSGLVK----YSYPNWNVGNEELGSSGNPNAVKWPPR 114 Figwort mosaic virus (ST...
Q8JTA4        72 --------------KGSVIPTQQEt----PEvsEGAKYQK----YSWPNHNVGNPELGSSGVKNPVYWPPT 120 Mirabilis mosaic virus
YP_001931965  66 --------------DPKTPPEPTKkgpeePGtsKDPNPPKpvipYSYPNWNVGDEAYGSSKGPNPPSWPPR 122
Q7THB6        70 pd-----------kGKQIVSPDKQ-----ESstPSSNFTR----YSYPNWNVGNASLGSSGNPDALKWPPV 120 Dahlia mosaic virus
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