7AFO,6IFS,3FUU


Conserved Protein Domain Family
RsmA

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COG0030: RsmA 
16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity) [Translation, ribosomal structure and biogenesis]
16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity) is part of the Pathway/BioSystem: 16S rRNA modification
Statistics
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PSSM-Id: 439801
Aligned: 885 rows
Threshold Bit Score: 128.319
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
7AFO_Y         1 MNNRv---------------HQ-GHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTV 64 
WP_013863208   1 MH-------------------Q-SRLGRQEFGQNFLVDTRVIDHIVGLVA-ERPGPIVEWGTGNGALTLGLDRLGRRLEG 59 
WP_010256780   1 MTKKk--------------------lPVRFTGQHFTIDKVLIKDAIRQANISNQDTVLDIGAGKGFLTVHLLKIANNVVA 60 
WP_076930353   1 MNKNr--------------------vPVRFTGQHFIIDTQLIEDSIRLAEIQKNDLVLDIGAGRGFLTGHLVRYSGNVIA 60 
WP_014967278   1 -------------------mfnkDNQTKLKNSQNFLHSEKLVSELIAESNICEDDIVIEIGGGKGIITKQLVKRCKKLYV 61 
WP_125990530   1 MFIFknplirifklkewilkMD-KGQLQLKYTQNFLQSSSLIIDLIEKTNLTEDDYVLEIGSGKGIITRELAEMVKQVVA 79 
WP_013632694   1 MKKRs--------------------lPVRFTGQHFTIDTILINDAIRLAEIQKGDVVLDIGAGSGFLTVHLVKHSTNVIA 60 
WP_093940163   1 MSKHd--------------sRHlHLPGRHELGQNHLVDDRIIARVADLVRAEPPGPVLEYGAGDGALTEVLVTLGRSVTA 66 
AHB40164       1 M-------------------------VDLTISQNFLKDPELVRRLVSKVGISKGDTVLDIGAGEGIISEVLLETGASVIA 55 
WP_015794708   1 MQRHktsp----------yvsE-FPGGRQELGQNFLADPALIAEIQRLVREQTQGPIIELGAGDGALTGPLSRLNRPVTA 69 
7AFO_Y        65 IELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGElaekmGQPLRVFGNLPYNISTPLMFHLFSYT-DAIADMHFMLQKE 143
WP_013863208  60 IEIDPRRVQELKRKVG--PHVCISEGDILRHA-PP------AGAVLVSNIPFHLTTPILRHLLRSR--RWTDAVLVTQWE 128
WP_010256780  61 IENDTALVEHLRKLFSDARNVQVVGCDFRNFAVPK------FPFKVVSNIPYGITSDIFKILMFESlENFLGGSIVLQLE 134
WP_076930353  61 IESDPGLVAELRTRFAFNKNITVVNSDFRKFRIPQ------KQFKAVSNIPYGITSYILRSLMYNNtEFFEKGSLVIQLE 134
WP_014967278  62 IEYDFQLYKALKDKLSNVKNIELIYGDFLEFKLQM-----ESKYKVFSSIPYNITAAILSKLTSSC-NPPEDMYIILQKE 135
WP_125990530  80 IEYDQSLCRYLNNMFLPSKNVEIIEQNFLNYSLPK-----NKRYKVFASIPFNITAEIIKKLTEIS-RAPKDSYLIIQKE 153
WP_013632694  61 IENDNRLVSELRSKFRVNKNVTIIGLDYRKFSVPQ------KNFKVVSNIPFALTSEILKSLMYTNiEFFKQGCLIMQFE 134
WP_093940163  67 VEIDPRRVRTLRTRFG--DRADVVHADLLTHR-PA-----GTGHHIVSNVPFHLTTPLLRRLLDAG--DWRTATLLVQWE 136
AHB40164      56 VEPDGSLFLKLKQRFSGRPDIQLVDKDFLNYPLPS------GPYKVFSNIPFSVTSAIVNKLLFVG-NPPRESFLVIQQE 128
WP_015794708  70 LEIDPRRVRRLQERFG--GRADVVRADVLRYRFPA------AEHTIVGNIPFHLTTAIIRKLLSER--GWSSAVLIVQWE 139
7AFO_Y       144 VVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMpHpV-KD-VRVLSRITTEAFNQR 221
WP_013863208 129 VARKRAGVGGA---TQLTAQWWPWYEFALDQRIPSTAFRPRPSIDAGLLLIHRRSEPlLpE-QK-QRSYQAWVARVFSSR 203
WP_010256780 135 PTQKLFSRK---LYNPYTVFYHTFFDLKLVYEVGPESFLPPPTVKSALLNIKRKHLf-FdF-KF-KAKYLAFISCLLEKP 208
WP_076930353 135 AAQKLFRRR---VFNPYVLFYHTFYDLELIYTVPPASFMPPPTVQSALVKISKKQSPrInI--EmKEKYFDFLCFILRYP 209
WP_014967278 136 AALKYAGKPFNR-ESMRSLLLKPYFDFDIVRNLKRNDFNPVPGVDSVLLHVKKRKNIlVrQ-DK-ENLYSDFIAYIFDNT 212
WP_125990530 154 AAWKYTGQSYYK-GSLRSLLLKPYFEFEIIHRFKRKDFRPIPDVDIVMLHIKKRRELlIkE-GQ-GRLYQDFLAYIFSQN 230
WP_013632694 135 SAKKLVRKK---YFNPYTVFYHTFFEVRFIYEINPESFMPPPTVKSALVKIGKKKCTd-nIgAEmKEKYLSFLHFMMRFP 210
WP_093940163 137 VARKRAGIGGT---TMLTALWWPWYEFSLAGRVPAAAFRPRPAVDGGLLVMRRRAKPlVsE-SE-RDDYQRLVRAVFTGR 211
AHB40164     129 AANRFMGKG---EGYLFSLLTRPFFDTSVLYKFKRDDFIPKPSVDSVMLGVRKRSQPlIkH--DlRTMYEDFICYVVGQQ 203
WP_015794708 140 VARRRAGVGGA---SMLTASWWPWYDFGLVRRIPASAFRPVPSVDAGLLTMWRRPVPlV---EE-RSGYQTFVKQVFQAP 212
7AFO_Y       222 RKTIRNSLGNLF--SV----EVLTGMGIDPAMRAENISVAQYCQMA-NY------L-----A-------------E---- 266
WP_013863208 204 GRGIVEILRRNGv-PRriaaDLVRRERNRPVALARDLLAEDWATAY-RS------A-----Qgs---------------- 254
WP_010256780 209 DLSVKTALKSIF--RKsqvrSISEKFGLNLNAQIVCLSPSQWVNCFlEM------L-------------------Evvpe 261
WP_076930353 210 DLSVRTALKEIF--RKrqirEFSHKYGLKLDDVVTLFLPEQLSDCFvEM------L-------------------Rvvpd 262
WP_014967278 213 GKDMKTRCKNIF--SYkqikRLSRDIGFGMTDSPTCLSYEQWLKVF-QYf----aIgvsdeK-------------K---- 268
WP_125990530 231 NNGLKNKCKNIF--SYrqfkRLASDNGFKMKADPTDLNFEQWYQLF-CFfssapgMt---vK-------------Kr--- 288
WP_013632694 211 DLPSKTVLKKLF--RKqqvrELAESYGLVLDKPVFSMSAEQFLGCFvSM------L-------------------Tlvpi 263
WP_093940163 212 GTGLRGILTRLG--EArrvaRWLREEGLSGGELPRRLTAHQWVRLF-RT------V-----GgpgpapqrggpdrRgrre 277
AHB40164     204 KPTLKLRLKKIF--TAvqyyRISEDLGFSTEATVKNLTFTQWLMLF-EKyi---sLvd-asK-------------K---- 259
WP_015794708 213 GRGVEEMIARTGrvRRaelrEWVRWSRIPVRALPKDLAAEDWARLW-EL------V-----R-------------D---- 263
7AFO_Y       267 ----N------A 268
WP_013863208     ------------    
WP_010256780 262 kfhpS------- 266
WP_076930353 263 kfhpEn------ 268
WP_014967278 269 ----Nvv--nnA 274
WP_125990530 289 ----Klv--ngA 294
WP_013632694 264 dyhpNll----- 270
WP_093940163 278 eppaRlphhggR 289
AHB40164     260 ----Set--vgS 265
WP_015794708     ------------    
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