Conserved Protein Domain Family
RpoE

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COG1595: RpoE 
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase
Statistics
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PSSM-Id: 441203
Aligned: 960 rows
Threshold Bit Score: 41.9039
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_080040202   1 MRgippsdEtgaDqtgAagRLLTAA-RGGDGDAFRALVEPYRRELHVHCYRLLG-SVQDAEDLVQETLLAAWRGIGGYEe 78 
WP_128467100   1 ---------------------------MNSNSLLRNFFEENSGRLFGYLLKLSG-CREDAEDLHQECFLKYARNYp---- 48 
WP_038559290   1 MTekq-----npS---Y--FLWERF-KNGDDDAFYRIYDQYFNELYSYALNFSK-DTDFIKDCIHDLFLNLYKYRKTLSe 68 
WP_121615458   1 ---------------------ME------DQNTLE-QLNNELNMVCRYLVTK-GiPEKDAEDAVQEAAYKYLRFSDSIR- 50 
WP_083762616   1 -------mTk--D---El-SdlVKE-AAKDPNAFGTLYDYFFPKIYQYIYDSVG-DIELTELLVSETFYQVLSEITNLRs 65 
WP_119050694   1 MPend-ahA---D---Q--NWLQQL-QQNDEQALAALMKKYYASLKSYGIRFTQ-DEALVKDCIQEVFISLWQRRDNITt 69 
WP_041272637   1 ------------------------------MKTMEEIYKTYEKPIFHYFYGLTG-NAHLAEELTQETFFQVLRTFSGFRg 49 
WP_126342578   1 ---------------------MTNKeGRMLMIQIEQLYEEVQPQVEAFFYAKTG-NQMLAQDLCQDTFYEACKSIGSFSg 58 
AEI46868       4 LPdnhstfS---D---L--QLWLQL-KSGSELALGKLIKKYFNPLQNYGYKFIR-DEDFVKDCVQEVFIEVWQRRDRLSt 73 
WP_014357492   1 ----------------------------MDKQKLEQVYNENASAVYKYLLCLTH-DTYLAEELTQETFYQATKGIHNFRg 51 
WP_080040202  79 RASLRTWLYRIATNRCLNALRAGARRPAahaMarvppsehagasvpasepvptpmpaarparqgeeaswLEpYPDvllde 158
WP_128467100  49 DNYSLPLLYTVAKSLFIDLKRKSRDHDE---Ls------------------------------------GN-ESGh---- 84 
WP_038559290  69 TDNIQFYLLRSLRRLLHKEg-tKRNTLL---N-------------------------------------DE-QLlll--n 104
WP_121615458  51 SSRIRSWLIRVAFNCYYDQYRKNKRYIY---N-------------------------------------ME-EIIfed-- 87 
WP_083762616  66 TNNFHTYVFTVARELILARCDSNSSDSK-----------------------------------------IPaYf------ 98 
WP_119050694  70 VLSLKYYLLRAVKNKVLKSLHQKELQAD---M-------------------------------------TE-LQdry--n 106
WP_041272637  50 EAQVTTWLYKVARNV-YSMWKRKHKASY---Pl------------------------------------PE-PELlk--- 85 
WP_126342578  59 TSTLKTWLFSIANNLLKKYYRKNHYEQN---Lv------------------------------------AR-LSAll--- 95 
AEI46868      74 PDSVRAYLLSSVRKRVLREGFRQQILKE---E-------------------------------------TP-VNlend-w 111
WP_014357492  52 DCKISVWLCQIAKRLWYKELHKPEEMPL---Ne------------------------------------I---EEaq--- 86 
WP_080040202 159 lpDRLPG-PEAryetSES----VSLAFLAALQRLPARQRAVLVLRDVLGYRAAEVADLLGTTTNAVTMALKRARATLSRe 233
WP_128467100  85 ----tAN-PEEiy-sGKE----ETDMLMRALAMLDDDERELISLCSSGGMKYSEVSSVTGLSEANIKVKIHRARKKLKEi 154
WP_038559290 105 dtPVR-S-LEDei-iADEtkkeHFRELAEGMKKLTKKQQEALSLKFEHNLSYPEIADTLNISVESTRTMIYRALKELRKa 181
WP_121615458  88 ---esADiPEMiv-lEKE----SNDELYHLLNKLKPKHRELLLLKYVSELSYEDISKLLGIRISSIKTNLYRARKKLIKl 159
WP_083762616  99 ---------------KYF----HDHKLFKSFKKLTDRQQEVIYLRFCQRLNSNEISEITDSQEQEVKNLLYTGLKKLAKv 159
WP_119050694 107 ffQEF-S-VERli-iEKQvseeKAAALRKTLSQLSPRQHEVIYLKFYQQLDHGQIADLMNISRQSVYNHLHDALQKLRGl 183
WP_041272637  86 -gPASYE-PDTvl-eLKE----KLTLTSRVLQELPENYREVFWLREWHELAYEQIAVIMGKNVSWVKVTLHRARLQFRKn 158
WP_126342578  96 -iEEVHS-TEHli-eIKE----DMKSFLYVLSKLREEDRELVLLRTYAELSFAEIGEMLGKSENYARVTFHRLKRKLQTe 168
AEI46868     112 hfAEL-P-HERll-iEEEheaqLKHKISTLLNQLPKRQREAVYLQFYQNLEREEIAQIMNINPQSVSNLLQTAFKLFREn 188
WP_014357492  87 -aAINLE-KQHil-nL-D----KIELF-KLLHGLDEISREVVYLRLTGELSFSEIGDIMGKTENWARVTFYRGKQKIVKr 157
WP_080040202 234 LP----GPG 238
WP_128467100 155 IS----ESr 159
WP_038559290 182 IKkgktFNS 190
WP_121615458 160 YE----EAS 164
WP_083762616 160 I-------- 160
WP_119050694 184 WR----AEY 188
WP_041272637 159 YA----EKE 163
WP_126342578 169 ME----ELE 173
AEI46868     189 WQ----VIY 193
WP_014357492 158 RN----RNE 162
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