1P6S,4EJN,3O96,2UVM


Conserved Protein Domain Family
PH_PKB

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cd01241: PH_PKB 
Click on image for an interactive view with Cn3D
Protein Kinase B-like pleckstrin homology (PH) domain
PKB (also called Akt), a member of the AGC kinase family, is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase which alters the activity of the targeted protein. The name AGC is based on the three proteins that it is most similar to cAMP-dependent protein kinase 1 (PKA; also known as PKAC), cGMP-dependent protein kinase (PKG; also known as CGK1) and protein kinase C (PKC). Human Akt has three isoforms derived for distinct genes: Akt1/PKBalpha, Akt2/PKBbeta, and Akt3/PKBgamma. All Akts have an N-terminal PH domain with an activating Thr phosphorylation site, a kinase domain, and a short C-terminal regulatory tail with an activating Ser phosphorylation site. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. The phosphorylation of Akt at its Thr and Ser phosphorylation sites leads to increased Akt activity toward forkhead transcription factors, the mammalian target of rapamycin (mTOR), and the Bcl-xL/Bcl-2-associated death promoter (BAD), all of which possess a consensus motif R-X-R-XX-ST-B (X = amino acid, B = bulky hydrophobic residue) for Akt phosphorylation. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Statistics
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PSSM-Id: 269947
Aligned: 29 rows
Threshold Bit Score: 139.69
Created: 4-Feb-2003
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
phosphoinosit..
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:phosphoinositide binding site [chemical binding site]
Evidence:
  • Comment:binding to Ptd(3,4,5)P3 is required for Akt activation
  • Citation:PMID 9005852
  • Structure:4EJN; Human Akt1 PH domain binds N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h-Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide, contacts at 4A
  • Structure:3O96; Human Akt1 PH domain binds allosteric inhibitor VIII, contacts at 4A
  • Structure:2UVM; Human PKBalpha PH domain binds benzene 1,2,3,4-tetrakisphosphate, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  # ####   # #                           ## #                           
1P6S_A         4 VSVIKEGWLHKRGEYIKTWRPRYFLLKSDGSFIGYKERPeapd-qtlPPLNNFSVA----ECQLMKTERPRp-------- 70  human
4EJN_A         4 VAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPqdvd-qreAPLNNFSVA----QCQLMKTERPRp-------- 70  human
AAM91027       5 ITTVKEGWLMKRGEYIKNWRPRYFVLRSNGLFLGYKEKVkggd-ggcEPINTFSIE----RCQIMRQSKPKp-------- 71  Hydra vulgaris
XP_001747333   3 SRVIKEGKLLKRGEYISTWRVRWFILRDDGTFRGYKNRPmtp---tdPPVNLFEIK----DCTLGVTDDDKsg------k 69  Monosiga brevic...
XP_002129363  12 ASIVKEGWLQKRGEYIRNWRRRYFVLKTDGSFLGYKDKPdpd--nhqEPLNNFSVL----KSQVMRKDQQRen------a 79  Ciona intestinalis
CBY18308      56 LSIKKQGPLKKRGEFIQNWRDRYFILYSDGTFNGYRREPrqn---daNPENNFSVN----NAQLIKVRDTGfalrcrhkn 128 Oikopleura dioica
EGD77743       1 MSVVKEGWLLKRGEYISTWRPRYFVLRSDGKFLGFKQKPasa---sdPAVNKFDIR----DCKISVEDDKGks-----gk 68  Salpingoeca sp....
XP_003386314  14 RLIVKEGWLQKRGEYIKNWRPRWFILYSDGSFVGFKAKPaaadlalqDPLNNFRINa---NVQQLKQDKIKk-------- 82  Amphimedon quee...
CAF98575       4 VNIVKEGWLQKRGEYIKTWRPRYFILKSDGSFIGYKEKPdlnd-qtsPPLNNFSVAdprpNTFVIRCLQWTtv-----ie 77  spotted green p...
XP_001743446   5 DVVIKQGWLLKRGEYIRNWRPRWFQLKSDGSFRGFKTGPpqp---gdGPVNFFDLA----GSTLAKTDDGKppgs-kgkk 76  Monosiga brevic...
Feature 1                                 #                         
1P6S_A        71 NTFVIRCLQWTT----------VIERTFHVDSPDEREEWMRAIQMVANSLK 111 human
4EJN_A        71 NTFIIRCLQWTT----------VIERTFHVETPEEREEWTTAIQTVADGLK 111 human
AAM91027      72 NVFIIRCFQLTT----------LVERTFAVDSNFDREEWISALEEISRRLA 112 Hydra vulgaris
XP_001747333  70 FGFSIRFVQMTR----------IIERTFYTETLEEREGWIQAINDVKARVD 110 Monosiga brevicollis MX1
XP_002129363  80 FVFVVRCLQWTT----------IIERTFTSTSKVDREEWMKAIEGVSDQLQ 120 Ciona intestinalis
CBY18308     129 GSVIDRNFQAQSlqarddwvrcIEEVSGHPEETIECDELMEEIELGDGHTI 179 Oikopleura dioica
EGD77743      69 FGFSIRFVQMTR----------VIERSFHTESAMERQEWVDAITGLKHSLE 109 Salpingoeca sp. ATCC50818
XP_003386314  83 NAFSVRCLQFTT----------FVERNLCTETEAERTEWMSAIDQVVKTLK 123 Amphimedon queenslandica
CAF98575      78 RNFHVDSNEDREewmw---aiqSVANSLKMREQDEEEPMDLLGSPNESSLE 125 spotted green pufferfish
XP_001743446  77 YGFMIRFMQMTR----------FVERSFHLESEEERDEWVKAYEVVKSKLQ 117 Monosiga brevicollis MX1

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