Conserved Protein Domain Family
CydD

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COG4988: CydD 
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones]
Statistics
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PSSM-Id: 444012
Aligned: 295 rows
Threshold Bit Score: 345.59
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012879029    5 DPRLLQRTRAARRYVVLTAALGLASALLIVGQALLVASLLGALVAHGSV----PgPTA-LRTLGALAGVAAGRGLVAWAQ 79  
NP_973157       3 HKRLTGSVPKSKKWILLSALSSWISLLCNTAITFVTVRFIFGLYNSSLD----K-KMV-FVLLFAASAALIIRVIAVRKR 76  
WP_012803411    3 DKRLFELAPEARIPVFISVVLKVVALFANIIMMIALGRAIEGIFQGTST----L---LdSGTLALVAVALIVRAVAGYGT 75  
WP_012993260    3 DRRLLQICPESKRFIAGNIFFQWLELILSAGLYWLIASTIQYFYLKSSS----V-FAV-ETAVGAMLFLIFLRVVMRKAA 76  
WP_013252506    3 DRRLLGLAPGAMRHIVATVAWLWVGLAANVVMVYGITVLMASIVSGG--------ETP-LAEIPLLLCPALIKVASSRLS 73  
WP_013624645   15 PRRLLPLVGKAKKYIALTVLFRWLELVGSVGAVTALAFLLQHGWEQTLF----A-GLL-FPWLTLFAGAVLLRFLCVWLG 88  
WP_058118757    3 NKRLIAMVPEAKAFIFKKVAANWISLLASVVLWFTVAGMLEQVLEQGTA----S-TGF-GAAFAVAAGCIVVRFLLTRLS 76  
WP_069178750    3 NKRLIGIVPESMKFIIGNVAYQWCSLAANIALMTALANLLAGLADGSAD----K-SLF-GITLIGAAAAVAMKYTCAIQS 76  
WP_005931313    3 NKKLLSFDRKALHYVGLNVLFQWLGMLCNVVLVMTVSRLIGGVFAGSLT----G-NAL-WQGMLLCLLTVPVRYGLTLCA 76  
WP_124786562    3 EKRLFSLVPQATPYIMASVLFKWIALMANITVMWMLARILGGIVTNGLSaalaV-DAL-AQAALPLAAVIIVRAASIYLA 80  
WP_012879029   80 ERFAQKAAARTIAELRSQLVAHAVTLGPRWaSGARRAEVATLATRGLDALEPYLVRYLPSLLLTALVTPAVLVVLGAL-D 158 
NP_973157      77 SYFSYRAGTEVKRTLRSMLYDKFISLKLNYsQYISMAEVTQIGTDGIEQLDSYFGAYLPQFFFSMAAPVTLFIILAPI-N 155 
WP_012803411   76 QRAGDIAAVAAKKSIRTKIYNKLVSLGPAYqETVSTSEAVQLAVEGSEQLEVYFGGYVPQLFFSLIAPVILFICLLPI-A 154 
WP_012993260   77 AKMSYLASRNIKKVLRCKIYAKLLQLGSTWrETTSAAELVQAGVEGVEQLESYFGLYVPQLFYAFVAPLTMAAFFAGCgG 156 
WP_013252506   74 SRASFRAARDVKRILRGKVYEKMLRLGPTYlRDVTTAEVVQVSVEGTEQLETYFGKYLPQLLYALLAPVTLFSITAPI-S 152 
WP_013624645   89 TEFSQRAAVQVKKTLRSRIYAKLLKTGLSYrEKTSTAALLQMAVDGVEQLQVYLGGYVPQFCHSLLAPVTLFFLLAFL-N 167 
WP_058118757   77 ARYTHQAAASVKARLRPAIYGKLRRLGSGYaAQFPTAEAVQLAGEGVEQLETYFGNYLPQFFYAMLAPLTLLVVFLPL-S 155 
WP_069178750   77 SRLSFLSSKKVRKTIRGLIYEKLLRLGSDYkERTKTSEIVQLAVEGVEQLETYFGAYLPQFFYAMAAPLTLFAVTAFI-N 155 
WP_005931313   77 SDMSDRASKDVKRTLRSSIYAKLTRLGAGYsETVATSEAVMLASEGVEQIDTYFAKYLPQLFYSLLAPVTLFVLLVGV-H 155 
WP_124786562   81 QRAGDKAAFEAVRRVRSLVYDKLTALGPSYtETVPTAEAVQTSVEGATQLQVYFGGYLPQLFFAGLAPITLFVLLVGQ-A 159 
WP_012879029  159 WVSLLVCLVTLPLVPLFMWLVGLMTQGTSERRLVVVQRLGAQVLDLLAGLPTLRAFGREIGPGARVRSLGEASKKATMGT 238 
NP_973157     156 FFAALVLFVCVPLIPLSIAAIQTVAKRILKRYLDVYTGLGDSFLDNLRGLIPLKAYSDDEAQHRELNAEAENFRRITMRV 235 
WP_012803411  155 AGPACMLLACVVFIPALIIIVRRKATAVAEDYWDTYADLGSMFLEDLQGMTTLKIFQADKMRHQQMNNTAEGFRKATMRM 234 
WP_012993260  157 LKIGAVLLACVPLIPVAIIAVQKFAKRLLRKYWGQYTQLGSSFLENLQGLTTLKTYMADAKKNEEMNIEAERFRKVTMAV 236 
WP_013252506  153 VPAAVVLLVFVPLIPLVIMVIQRVAKRLLGSYWDEYAALGDGFLENLQGLTTLKIYQADEARHRQMNEEAERFRVITMKV 232 
WP_013624645  168 LKVALLLLLGVPLIPLAMFGVQKGARRLMRAYWGTYTDLGQGFLESLQGLTTLKIYGADQARHDQMNAAAEGFRRITMKV 247 
WP_058118757  156 PLTAAVLFLCVPLIPAAIIAVQKVAKRLLGKYWDAYANLGDSFLENLQGLTTLKVYGADGARHEAMNAEAEHFRKVTMKV 235 
WP_069178750  156 LPSAIILFVCVPLIPIAIAAVQAWAKKLLSKYWGQYTALGDVFLENLQGLTTLKIYQADEFKNAEMNEEAEKFRKITMKV 235 
WP_005931313  156 ARSAILLLCCVPLIPLSIVAVQKFAKKLLANYWGEYTTLGDSFLENIQGLTTLKIYQADGWKHEEMNAQAERFRKITMKV 235 
WP_124786562  160 GLPAALLLACVPVIPVSIMMVMRNAKKIGAEYWGSYVDLGGMFLEAVQGLTTLKVYQADRSWHERINAESERFRTATMRL 239 
WP_012879029  239 LRVAFLSGMVLELLTTLSVAVVAVGVGLRLVHGSMTLTAGLAVIMLAPEVYLPLRAVGAQFHASTDGLAAASSAFALLEA 318 
NP_973157     236 LTMQLNSIFVMDTVAYGGTALGTIVSLYQLRVGNLSIEGDLLFILLCAEFFLPLRALGSFFHIAMNGITAANRLFELMDV 315 
WP_012803411  235 LGVQLTSIGAMDVVAYGGAAAGIVVALVLLFQGSLSFAAAFAVVFLSQEFFLPMRALGSLFHAAMSGMASSVRIFELLDT 314 
WP_012993260  237 LSMQLNSLVIMDLVSYGGAVLGIILTVQAFRSNTISLAACIFMLLLSAEFFLPMRSLGSFFHVAMNGMAAGEKILKFLDT 316 
WP_013252506  233 LRMQLNSIIVMDVIALGGAAAGIGVALLELSTGSVALQGFLMIALLSADFFLPMRQLGSFFHVAMNGMAASRKIFRILDL 312 
WP_013624645  248 LRMQLASVTLMDLIAYGWTALGIIVALTEVAKGRMPLWSGICVILLSSEFFLPLRLLGSFFHSSMNGIAAAEKMFALLDL 327 
WP_058118757  236 LTMQLNSVTIMDLVAYGGTALGSILCARAFLLGQVSFGGAIAMILLASEFFLAMRSLGSFFHVAMNGMAASDRMLRLLDL 315 
WP_069178750  236 LVMQLNSITIMDLVAYGGAALGIILATTQYAAGNVSLAGCLLILLLSADFFIPMRQLGSFFHIAMNGMAASGKIFALLDL 315 
WP_005931313  236 LTMQLNSVTLMDLMAYGGAGLGIISAASAFAKGQLSLTSALTILLLAADFFLPLRLLGSYFHIAMNGAASAEKIFRLLSA 315 
WP_124786562  240 LVMQLRSICVMDLVVYMGAALGIIVATLQLATGKIGFEAAFLIVFLSQEFFLPMRRLGSLFHTAMNGMAASRRMFGILDT 319 
WP_012879029  319 GvdgadgadgldigpagglgrevradvVRE----------MEsvaslprisrttSPlpsltdgvqvS--PGgglgtgvSv 386 
NP_973157     316 K--------------------------SDSasilseaeleETa-----------KKikraq-fgsqPdsLQg------Nl 351 
WP_012803411  315 K--------------------------ETP----------RKd-----------AKl-------------Ta------Qq 328 
WP_012993260  317 P--------------------------NPP----------PKq-----------LSl---------------------Vg 328 
WP_013252506  313 D--------------------------EPC----------EKt-----------LDa-------------Vpg------- 325 
WP_013624645  328 A--------------------------EPA----------EKa-----------GEl---------------------Dr 339 
WP_058118757  316 P--------------------------EPD----------QGq-----------TEl---------------------Tn 327 
WP_069178750  316 D--------------------------EPA----------KGt-----------IRg-------------Ip------Ed 329 
WP_005931313  316 Q--------------------------EPE----------DGe-----------KTa-------------Dp------Ad 329 
WP_124786562  320 P--------------------------EPE----------RGd-----------VEl--------------------dGr 332 
WP_012879029  387 rAVVLDGVSVRAG--DRaVEAPSGLSARIElgtgrpgGGRVIVLRGPSGAGKSTTVDVLLGLLRPDAGSVSLELsdarkt 464 
NP_973157     352 pSLEVKNLNFNYN--ES-KQALKNISLEFL-------KPGFYGIAGESGSGKSTAAALLMGLQKNYSGEILLSGi----- 416 
WP_012803411  329 cELSCRTVGYTYPgsSA-TPTLHSINLDFP-------ANSFTGIVGKSGAGKSTLAAVLSGHADAYTGTVAINGv----- 395 
WP_012993260  329 gKIVLHNVSFSYV--EG-REALKKVNITIP-------SPSFIGIVGKSGSGKSTLAYLLNGRNCPDSGEITIGGr----- 393 
WP_013252506  326 dTLSMSDACFSYG--DG-REVLHGVSMEVP-------ASGVTAIVGGSGCGKSTVAQLFAGLSDAYSGDVRLGGk----- 390 
WP_013624645  340 fDIRLAACGFSYV--KG-RETLRKISLEIP-------AGSFAAIVGESGSGKSTLAGILAGVHRNYTGSIRIGGr----- 404 
WP_058118757  328 gAITVQGLSFSYG--GD-KTALSELDCTIP-------QGCFFAVVGRSGCGKSTLAAILSGVQVHYRGSVRINGt----- 392 
WP_069178750  330 sGIVVSDLNFAYE--TD-RGILSGVALRFP-------FGSFSAIVGESGCGKSTVAAILMGRKKNYTGTVTIGGe----- 394 
WP_005931313  330 sTLALEHVTFGYE--KE-RTILHDVTLTIP-------QGSFVSLVGESGCGKSTIAAILSGARTATEGEVTLGGi----- 394 
WP_124786562  333 gDIELAGVSYAY---GD-RTVLDSANATIA-------HGSLVALVGESGGGKSTIAGIIAGRKGAYRGSVRIGGv----- 396 
WP_012879029  465 lnlggsDTSEEWRDWWWSQVVWVPQRPAIAPGTLRDVVAGGvrgddesgagvrdddehrdhehqdrereregcrhrvhrT 544 
NP_973157     417 ------EAKKLPDEFRARYMNLVSTESFLFGASVRENLLIA--------------------------------------K 452 
WP_012803411  396 ------ELRDLSASTLATLVTVVPSDSMLFAGSIRENLQMA--------------------------------------A 431 
WP_012993260  394 ------SITEISVAALKQVVTYLGAASVLFKGTVRENLALA--------------------------------------M 429 
WP_013252506  391 ------QVRDIRRESLARTITSVGIGSYLFRGTVRDNLLMA--------------------------------------S 426 
WP_013624645  405 ------EFDGISPESLRRRIVLVEHNAHIFKGTVADNLRMG--------------------------------------R 440 
WP_058118757  393 ------ELREGTAESLRHLMTVVSSNSYLFGGSVRSTLLEG--------------------------------------K 428 
WP_069178750  395 ------DLKRIDEAELNRRITYVSHSAYLFKGTVRDNLRMG--------------------------------------R 430 
WP_005931313  395 ------PVSEWKQADRLRLLTLVPHNAAIFKGTVEANLRMA--------------------------------------R 430 
WP_124786562  397 ------ELRDATAASLMRAVTLVPTNGYLFAGTLRDNLLLA--------------------------------------Q 432 
WP_012879029  545 RD-GDAGLHAAARTTGLDVVVAGL------ADGWDTRVGVGGVGLSVGQRQRVALTTALVAgaDRPVVVLDEPTAHLDAA 617 
NP_973157     453 PSaSDEELMSVLKEVLLDEFILNRnssgdgNSGLDFYIESGGKNLSGGQVQRFALARALLH--DADIYIFDEAVSNIDVE 530 
WP_012803411  432 PCaTDAAMEGALGRCGILNFVRT-------AGGLDLVLSEGGSNLSGGQRQRIALARALLH--DTPIYVFDEATSSIDAE 502 
WP_012993260  430 TEpDEQRMWEVLEDCRLAGFLKN-------EEGLETKLTENAGNLSGGQRQRLALARAILH--DSSIYLFDEATGNIDSE 500 
WP_013252506  427 PHaSDDALWEALDAVALGAFLRG-------QRGLDTMLEGEGANLSGGQRQRLAIARALLH--ESPIYIFDEATSNIDVE 497 
WP_013624645  441 PEaSLQEMAAVLKRVRLYDFVMA-------QGGLAMPLREQGANLSGGQRQRLALARALLH--GGDIYILDEATSNMDAE 511 
WP_058118757  429 PDaVETELRDALRRVNLLEFVDA-------QGGLDMPLLERAANLSGGQRQRLALARALLK--DSPIYIFDEATSNIDAE 499 
WP_069178750  431 TNaTDAECWNALEQVHLADFLKS-------ENGLDTALTEKASNFSGGQCQRLALARALLH--DSPIYIFDEATSNIDVD 501 
WP_005931313  431 PDaAEAELWAALEQVNLADFCRS-------QSGLATALHEGGSNLSGGQRQRLAMARALLH--DSPIYVFDEATSNVDAE 501 
WP_124786562  433 PNaTDAELLCALGRTRVAAFVQA-------NGGLDMVINEGGTNLSGGQRQRVCMARALLH--DSPIYVFDEATSNVDAA 503 
WP_012879029  618 GEQVVLDTVRAWRdAGRTVIVVAHRESVVGLADQVI 653 
NP_973157     531 SEELILSTLYELS-KTKIIIFISHRLANIENADHIY 565 
WP_012803411  503 SEKAISEVIRSMK-GDRTVIVIAHRLSLVKEADNIV 537 
WP_012993260  501 SENAILAEIRRLS-KSKTVIMITHRLANVAEADCIY 535 
WP_013252506  498 SEEVVMGVVRELA-HERSVIVISHRLANVVDAERIY 532 
WP_013624645  512 SEESVLRVIETMA-GEKTVILITHRMAAAARAERIF 546 
WP_058118757  500 SEEDIMRVIRSLK-GSHTVLLISHRLANVVEADKIL 534 
WP_069178750  502 SESAILEKIYALA-KTKTVILISHRLAAVVPADRIY 536 
WP_005931313  502 SENDIMKAIHSLA-GKKTVILISHRLANVVDSDCIY 536 
WP_124786562  504 SEAAIGEVIASLA-GEHTIIVVAHRLSTIVDADQIL 538 
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