Conserved Protein Domain Family
VCBS_repeat

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TIGR01965: VCBS_repeat 
VCBS repeat
This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.
Statistics
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PSSM-Id: 273899
Aligned: 18 rows
Threshold Bit Score: 81.23
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
BAC48979       28 AGSISISDANAGQAAFKTTVIAaSGDLGTLTIA-ANGSYVYSVADS--KVQYLGAGDTKVDSFTVTSLD--G--TQKQVA 100  Bradyrhizobiu...
BAC48979      762 SGQLTVVDPDQNQSWFQPGTITgAGNLGTLTLA-ADGTYTYAVADS--AVQYLGAADSKVDTFTVKSVD--G--TSKVVS 834  Bradyrhizobiu...
BAC48828      556 TGQVSFSDVDAIDTHTLSVSVAaA--HGTATVD-PDGTWHYTVLDSg-AVDALAVGEHLADSFTVEVDDhhGglATQQVT 631  Bradyrhizobiu...
WP_011073846  443 SGQLSIQDPDRDQTHFSAGS-L-QGQYGYLTID-VNGHWIYSADNSlaTVQSLKSGEHLTDTFTIHSAD--G--TAQNIT 515  Shewanella on...
WP_011073846  549 NGNLAITDNDHEPHLFTA-TEQ-YGQFGTLIID-ELGHWTYTADNSqtAIQALKTGESITDTLVVQTQD--G--TQQTIS 621  Shewanella on...
WP_011073846  655 DGQLWVSNPDTGRAGFAAE-QL-QGQFGILSIN-THGHWTYTADNNnpSIQALKHGESLTETLFVQALD--G--TTQKIA 727  Shewanella on...
WP_011073846 2202 SGKLAISDADDGQAHFIAQTAT-TGSYGSLTIG-EDGQWQYQLDNTkpEVQALKSTETATDTFTVHSAD--G--SSHNIT 2275 Shewanella on...
WP_011073846  964 SGKLTISDVDSTQAGFIAQNNL-AATHGCFTLS-ASGDWTYALDNSnaAVQALKTGESLTDTVTINSID--G--TQHTIA 1037 Shewanella on...
WP_011073846 4271 SGFIEVQDADKGQSSMQAMTDH-HAAHGTFSID-VNGDWVYQLDSRrpDVQALKAGETLLETITVHSAD--G--TPHEVN 4344 Shewanella on...
WP_011073846  331 TGQLHSIDPDHNDAVSWAVLDG-QGQYGQLSINpLTGQWQYQLNTHatATLALVSGQQVTETFTVTATDqsGhpVSQQVS 409  Shewanella on...
BAC48979      101 FTIYGVNDTAIIGTPTVVDVVEDAT 125  Bradyrhizobium diazoefficiens USDA 110
BAC48979      835 FTIHGANDAAAIGDPQTHDVTEDSG 859  Bradyrhizobium diazoefficiens USDA 110
BAC48828      632 IDITGTNDAP-VAVPDTNSGLEDST 655  Bradyrhizobium diazoefficiens USDA 110
WP_011073846  516 VTINGTDDKAEISGTTSASLTEDDN 540  Shewanella oneidensis
WP_011073846  622 ISIHGTDDHSVIMGTSVMRVFEDKR 646  Shewanella oneidensis
WP_011073846  728 ILIKGADDKAIIGGTDTATLVEDQS 752  Shewanella oneidensis
WP_011073846 2276 ITIQGQRDNVVIGGVDVGVVKEDVS 2300 Shewanella oneidensis
WP_011073846 1038 VTINGSNDGAIIAGVDTATATEDAN 1062 Shewanella oneidensis
WP_011073846 4345 ITIHGQNDGAVISGADTGQLVEDQN 4369 Shewanella oneidensis
WP_011073846  410 IQVNGADNVAIIQGEIIGLVTEDTQ 434  Shewanella oneidensis
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