Conserved Protein Domain Family
cytochr_II_ccsB

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TIGR03144: cytochr_II_ccsB 
cytochrome c-type biogenesis protein CcsB
Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction. [Energy metabolism, Electron transport, Protein fate, Protein modification and repair]
Statistics
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PSSM-Id: 274447
Aligned: 40 rows
Threshold Bit Score: 259.467
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
NP_848976     45 GMILGNLCLGSLLMARTFHQGFLPLSNLYESLLFLAWCLSFVTLALQsqWR--LSIAIGTPLVMLVVAYAHWALPAGMQL 122 Cyanidioschyzon...
WP_011342860  40 LLWSGFTLHSLSLASRYLAtGFPPLSSLHESLSFFAWAIIGTFLLFHlrYRlaVLGAFVSPLALVLMIFGSAV----SSA 115 Pelobacter carb...
WP_010943894  38 VLTGGFVVHAVYTVDRYIEaGYTPITNLHESLSFFGLAIAGVYLIFErkYRtiILGSFVTPLVLLILIGSTGF----PSA 113 Geobacter sulfu...
WP_015944563  45 AAIIGLIANTAAIALRWVITQRPPLTNGYEFILTFCWGIVIIYIFAEfrYKikALGSFVMPVTFILLMFIIMKMGPSERV 124 Desulfitobacter...
WP_011393687  42 VTAAAFALHTMALVARTIAAGRLPSSNMYEFTSLFAWGVALVFLVVErlYAikALGAFVLPLIFALLGYAAVLP----RE 117 Moorella thermo...
WP_011194869  50 AAVAGVILQGLAIVARWMGSGQVPLANMFEYMSFLGWSIMLFFVILSawYKlpGLGAFVAPVGVVVIAYAS-VFPTE--- 125 Symbiobacterium...
WP_020754615  49 VTIIGFLAQVGYFVTRWIAAGHAPVSNLFEFTTFFGMMLVAAFIIIYfiYRlsVLGLFALPVALLVIAYAS-MFPRE--- 124 Geobacillus sp....
WP_011096708  93 LSFIGVVLHGTSVILRGIAAGRVPWANMYEFALTSTFVCVLVFLSVArkVDlnFLAPFFFGLIVIFLGSGLTLVYVP--- 169 Tropheryma whip...
KCL59627      59 VAYLGIGLLLACVVLRGLATQRVPWGNMYEFINLTCLSGLIAGAVVLrrARyrPLWVFLLVPVLILLTVSGRWLYAN--- 135 Mycobacterium t...
WP_011074996 117 LVWLGVIVHLVSIVLRGMSADRFPFGNLYEYILVVTFGAMTGAAFLLqrPQlrVLWPWVITPMLALLFYGGTELYAD--- 193 Corynebacterium...
NP_848976    123 SSSLVPSLRSHWLTMHVSVMIMSYASLMMGCLLALVYLSMS--------------------------------------- 163 Cyanidioschyzon...
WP_011342860 116 TAAPPPALQSWWLPVHVALAFLGDAVFALAAVAGCLYLLQErmlkkkkv------------------------------- 164 Pelobacter carb...
WP_010943894 114 ISPLNPALKSRWLAVHTVMAFLSYAAFAVAFGAAIMYLIQEhflkskkl------------------------------- 162 Geobacter sulfu...
WP_015944563 125 AGAIPPALKSQWLTFHVFTAMLAYGAFAISCGLGIMYLLKTgagshekhe------------------------------ 174 Desulfitobacter...
WP_011393687 118 IRPLVPALQSYWLQIHVLTAILAYGGFGISFGLAIMYLIKErketagnf------------------------------- 166 Moorella thermo...
WP_011194869 126 VRPLAPVLQSVWLPLHVSVAALGEGAFAVSFGAALMYLLRVrkeqssrweemgleffffcgamltafivlalgfklsgyr 205 Symbiobacterium...
WP_020754615 125 ISPLIPALQSDWLHIHVTTAAAGEAILAISFVAGLIYLIRVvdqskpskrtfwlevvmfclittlgfvivstafglsgye 204 Geobacillus sp....
WP_011096708 170 ISPLPPALHSYWLIIHILVAILATGFFMLGALLSGLQLSRNvffaq---------------------------------- 215 Tropheryma whip...
KCL59627     136 AAPVMPALQSYWLPIHVSVVSLGSGVFLVAGVASILFLVRTsrlgeptgeg----------------------------- 186 Mycobacterium t...
WP_011074996 194 SAPVVPALQSFWFPIHVSTVSIGGSIGIVSGIASLLYLLRMaqpkgrekg------------------------------ 243 Corynebacterium...
NP_848976        --------------------------------------------------------------------------------     Cyanidioschyzon...
WP_011342860     --------------------------------------------------------------------------------     Pelobacter carb...
WP_010943894     --------------------------------------------------------------------------------     Geobacter sulfu...
WP_015944563     --------------------------------------------------------------------------------     Desulfitobacter...
WP_011393687     --------------------------------------------------------------------------------     Moorella thermo...
WP_011194869 206 aavtnlaggttvleytlppfigplgstrgeasflglqlplvhaptwmrgayaarnlntlvlstlfgvilygilrliargp 285 Symbiobacterium...
WP_020754615 205 akftwvdknkqtveviydmpalvgp---hkgelmkesagrmeplvempaiinarklntviwsliagtalyimlrlllrkr 281 Geobacillus sp....
WP_011096708     --------------------------------------------------------------------------------     Tropheryma whip...
KCL59627         --------------------------------------------------------------------------------     Mycobacterium t...
WP_011074996     --------------------------------------------------------------------------------     Corynebacterium...
NP_848976    164 -----------SHPHQLEELSYQSLRFGFICLTLG-MISGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHTR--RIW 229 Cyanidioschyzon...
WP_011342860 165 ----sslfyrlPSLQVLDNLNYRCLTIGFPLMTLG-IITGAIWADRAWGAYWSWDPKETWALITWFLYAALLHGRlaIGW 239 Pelobacter carb...
WP_010943894 163 ----galyqklPSLDVLDEINYRCLTLGFPLLTFA-IISGAIWAESAWGTYWSWDPKETWSLITWFVYAALLHGRltTGW 237 Geobacter sulfu...
WP_015944563 175 ---ketwlnrfPPENVLDELAYKMIGFAFPMLTLC-IVTGAIWANYAWGTYWSWDPKETWSLITWIIYAAYLHARlmYGW 250 Desulfitobacter...
WP_011393687 167 ---ssrlyqllPDLKILDELIYGAIAFAFPFMTLV-LITGAVWAERAWGSYWSWDPKETWALITWLIYAVYLHARltYGW 242 Moorella thermo...
WP_011194869 286 lrelgtravgnMNPKLLDEVSYRGIAVGFPLFTLGgLVFAMIWAQKAWGRYWAWDPKETWALITWLFYSGYLHMRivRGW 365 Symbiobacterium...
WP_020754615 282 vaaalkplvknVNLDLTDEISYRAVAIGFPVFTLGaLIFAMIWAQIAWTRFWGWDPKEVWALITWLFYAAFLHLRlsKGW 361 Geobacillus sp....
WP_011096708 216 -------srliPNVDFLENIAYKLNVIGFVFWSFT-LVAGAIWAEKAWGRFWGWDTKEIWTFIIWILYAAYIHARatAGW 287 Tropheryma whip...
KCL59627     187 --alagmvrrlPDAQTLDGIAYRTTIFAFPVFGFG-VIFGAIWAEEAWGRYWGWDPKETVSFVAWVVYAAYLHARstAGW 263 Mycobacterium t...
WP_011074996 244 --ffgavakplPSAKTLDNLAYKTAIWTVPIFGLG-VILGAIWAEAAWGRFWGWDPKETVSFITWILYAGYLHARatVGW 320 Corynebacterium...
NP_848976    230 HGTTSAFLACVGFVVIWICYLGVNWFAQGLHSYG 263 Cyanidioschyzon merolae strain 10D
WP_011342860 240 RGRKAAVLAIVGFALLLFTFLGVNLLLSGLHSYV 273 Pelobacter carbinolicus
WP_010943894 238 RGKKAAWLAIIGFFVLLFTFLGVNLFMSGLHSYT 271 Geobacter sulfurreducens
WP_015944563 251 KGKRAAWMAIIGFAAVLFTFFGVNYLLPGLHSYA 284 Desulfitobacterium hafniense
WP_011393687 243 KGHRAAWMAVIGFLAVLFTYFGVNLFLSGLHSYV 276 Moorella thermoacetica
WP_011194869 366 EGRAAAWVSALGFIIVLFTLVGVNLLVSGLHSYV 399 Symbiobacterium thermophilum
WP_020754615 362 HGEKSAWLAVIGFAIIMFNLVAVNLVIAGLHSYA 395 Geobacillus sp. WSUCF1
WP_011096708 288 RGTRSSVLSLIGFTTIIFNFTIVNVFFSGLHSYS 321 Tropheryma whipplei
KCL59627     264 RDRKAAWINVAGFVAMVFNLFFVNLVTVGLHSYA 297 Mycobacterium tuberculosis TB_RSA169
WP_011074996 321 RDTRAAWINVVALVTMIFNLFFINMVVSGLHSYA 354 Corynebacterium efficiens
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