2JOY,4A18,3IZS,3IZR


Conserved Protein Domain Family
KOW_RPL14

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cd06088: KOW_RPL14 
Click on image for an interactive view with Cn3D
KOW motif of Ribosomal Protein L14
RPL14 is a component of the large ribosomal subunit in both archaea and eukaryotes with KOW motif at its N terminal. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. Auto-antibodies to RPL14 in humans have been associated with systemic lupus erythematosus . Although RPL14 is well conserved, it is not found in all archaea, and therefore it is presumably not essential.
Statistics
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PSSM-Id: 240512
Aligned: 151 rows
Threshold Bit Score: 53.2483
Created: 6-Mar-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
RNA binding
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Structure:4A18; Tetrahymena thermophila 60S Ribosomal Subunit, contacts 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               # ##           #  #  ##                 # ## #         #   # ##         
2JOY_A         4 IEVGRICVKVKGREAGSKCVIVDIIDD-NFVLVTGpkditgVKRRRVNILHLEPTdkKIDIQKg-aSDEEVKKKLEESN 80  Sulfolobus solfa...
4A18_F         7 VQVGRVVYINYGADKGKLAVIVNIINQ-NRILIDGe----hIVRQVIPIRRVHLTkfQIDNVElnqRTVLLKKKIAKFD 80  Tetrahymena ther...
YP_003677609   4 WQIGQVVRSKAGRDKGRVFVIVGKFDDqHVLVADGdlr-tiEKPKKKKFKHLQRYndVIWQIKe-kILNGDKLTNEEIR 80  Thermoanaerobact...
YP_004464127   3 VDIGQVVRSKAGRDKGRYFIVIGIEGSdYAFIADGvlr-kvENPKKKKLKHLEIKneLIGEIKe-kISNSKRLSNSDIR 79  Mahella australi...
ZP_10505954    4 IALGQIVHSRAGRDKGRYFIVVGIVDEnYVLIADGdlr-kiERPKKKKIKHLVFHdwIAKDIQe-aFQLNKKIKDSDLR 80  Caloramator aust...
YP_005146545   3 VVLGQVVLSKAGRDAGRIFVVTGLIDDsYVLISDGssr-rlENPKKKKLRHLIVTnnVIEAIAq-kISSGEKCTNAEVR 79  Clostridium sp. ...
YP_006789090   7 INLGQIVKSKAGRDKDKIFTVIDIVDEdYILIVDGkyr-klDNPKKKKIKHLMVYknVLGDLKe--KIARNEINNSYIR 82  Clostridium acid...
ZP_07526861    6 LSLGQLVKASCGRDEGRYFFIVKIVDEsFVLISDGksr-klDKPKLKKIKHLKVEkyINKEIKm-lLQNGDKITDSYIR 82  Peptostreptococc...
YP_004310405   5 YSLGQIVFSKCGRDQGKPFIVVSIEEE-YVYLVDGslr-kvDNPKLKKKKHIQPTltTNEWIKq-kIIEENRLTNSDVR 80  Clostridium lent...
ZP_09738245   11 YCVGQLCYSKQGRDKDKVYIVYEIVDEdYILVVNGddr-kiSNPKKKNKKHLQKMnhIIEDFDk--MKSEDEINDLIVK 86  Helcococcus kunz...

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