Conserved Protein Domain Family
RsmB

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COG0144: RsmB 
16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]
16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family is part of the Pathway/BioSystem: 16S rRNA modification
Statistics
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PSSM-Id: 439914
Aligned: 693 rows
Threshold Bit Score: 195.997
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_006288715  10 GKTGKAKKDLSPRSIAWKSLIRVHRNQAFSNLLVPQELSSFSPDELGGRDRAAVTDMVYGTLRWQGFLDAVIADVSFRPL 89 
WP_085756623  17 GKTKTESLLADLLSKCSDKAFVNNFCCGIIRSLPAVDIVTAKISGAGEKKTSPQLWTVLRCGVFDIIYRPKQEIYAAVNE 96 
WP_013498475   9 VRLLTKLDENNSYSNILLDESLSRSDFDKRDKKFIAALFYGVIERRLTLDAIIVDLSKNPKSKLNYTLRNILRCGLYQLK 88 
WP_083817245  22 MRALLAIDTAGMLGDDLFDQVSSREALDLRDRAFMVELVRGVLRYRATLDWRLGLLSDRRITKLPTLVQTILRLGAYQLL 101
WP_041695100  10 YQALIRVERDGAYLNVALQEALAGAGVDERDRALATEIAYGTLRRQITLDRLLSPLVRRPLAKLDPEVRVILRMSAYQMT 89 
WP_012864311  17 VKALSEINRNGAYANIKLQEYLQKYHLSDLDRRFFTELVYGVIRRKNYLDAIIVFFAKRPIKKLSSMVLEILRLGIYQII 96 
WP_111333644   7 QEVLEGIEEEDAYSHISLDAALRRSNLDARDRGLATELVYGTLTWQRSLDTILGQFLASGVASLDLSVRVALRLAVYQIV 86 
WP_013181249  14 YLALLSSAREESFLIDSLAQWQAKCRPSIQDYHLAREVAYGTTRMALALDHLALQLADKKKLALKLREKILFRMGLYQFH 93 
WP_013120655   9 LEVIYQVDREGAYSNIALNKVLEKYQPEKKDRAFITELVYGTLKRLNTLDWIAGRFVSRPLDSLTPWIRNIIRMGIYQIF 88 
WP_013842312  11 LQILKAVEEEGAYANLALNKWMERYQPGKLDRAFATEITYGVLRNLNTIDWVLAHFLKQPLAAQTAWIRNILRMGTYQIL 90 
WP_006288715  90 KRIEIPVLDAARLGVYQLLFLGspdyaavsqtvgllrrggrsDARAAGFVNALLRKV-A----------TRSRqeweaVL 158
WP_085756623  97 WVKLAGGKKQRGFANAVLRTVIrn--------------------isSRSVESPLRADfLpvsgaagclfKQ-------DI 149
WP_013498475  89 YMDSVPDNAAVDESVELAKKCR--------------------NPAAPGFTNGLLREF-I----------RRSK-----EL 132
WP_083817245 102 YLDRVPDSAAVNESVQMTKQQSrr-----------------lGRDWSGFVNAVLRAL-L----------RSPE-----PA 148
WP_041695100  90 WLDRVPAYAAANDAVELAKRHR---------------------PQASGFVNAVLRQY-A----------ERAQew--eSL 135
WP_012864311  97 YMDKVPESAAVNESVKLAKKLT---------------------RGLSGFVNAVLRSV-L----------RESD-----SI 139
WP_111333644  87 FLDRIPPHAAVNQAVEIVKAGP--------------------HRRASGLVNGVLRNL-L----------RQEE-----PI 130
WP_013181249  94 YMDKIPLYAIVDETIKIAKIHC--------------------HESFVKFLNACLRKV-E----------Eid-----pQL 137
WP_013120655  89 FMDKVPNSAACNESVNLARKFG--------------------HQGTVKFVNGVLRNV-V----------RHKD-----RV 132
WP_013842312  91 FMPRVPDSAACNESVELAKKYG--------------------HAGAAKFVNGVLRNI-A----------RQQN-----DL 134
WP_006288715 159 Tsri---pkADSDARLALRYSHPNWVVGQLRRSWEAaayedradDQLAALLSADNEPADVTLC-ARPGLiS-REELIAQL 233
WP_085756623 150 Fss----pdKEPAEYLSQVYSLPCWLVAGWLKNFGW--------EKACAVCRASNRKPGLYLR-PNKTLtT-PEKLLELL 215
WP_013498475 133 pk------tNSETERLALEYSCPEWLVKKWSFEYGK--------DRCLSLLKTSLGQAPTTIK-VNNLSgG-IEDTLDML 196
WP_083817245 149 wpd----agSDPVVALAVRYSCPAWLVERWCRRLGA--------ERAEVLCRASVEAPPLTLR-VNTLRtS-RSALLADL 214
WP_041695100 136 Lkka--lagAKDVERWSVMYSVPAWIVERLVADHGA--------DRVLAALASMNEPAPMSLR-ANRLReS-REETVARL 203
WP_012864311 140 sig---elaKSEAEEISFIYNQPLWLVNFWIKEMGK--------DKTVDLCAWFNEQPRLTSR-INTVKvS-IEDCLKEL 206
WP_111333644 131 QwwrdedrkKKPSRYIGQRYSIPNWLGHRMLQTWGL--------RHAEAMAASFAERPPLYLRkIEAID-S-ADEs--KL 198
WP_013181249 138 Pk-------GETVPELSIRYSYPAYYVQELVQNFGL--------EKAEEIMEAGNRPSQTMFR-VRPQa-SrPKEANGEI 200
WP_013120655 133 kwp---dkdAEPVEYLSIHYSHPTWMVSLWIEEFGF--------EETEKLCRANNETPPNSIR-TNTLKiS-RDELIGVL 199
WP_013842312 135 dyp---dpeTDPVNYIALKHSHPTWLVERWLKEFGF--------EQTVALCQANNRPALNTIR-TNTLKiT-RPDLIRRL 201
WP_006288715 234 EGiSAg---RagsdgqavpgrivwgetsFSPYGLr-IK--GVN-PHDIPAVRQGLAGVEDEGSQLAALAV--ADVDkaag 304
WP_085756623 216 RE-EGaa-aYr------------------kGDIIa-LEkaGRP-VEKLPGFEEGLFCVQDITAFEAGLLI--NPSP---- 267
WP_013498475 197 IA-DGvt-fErs---------------kILEYAVn-VAn-AGA-IEKTEAYRQGKFHVQDIASQLCCKAL--DPQP---- 250
WP_083817245 215 AA-AQve-aNpt---------------sVSEVGLq-LSr-SCA-VIDLPGYAEGRFYVEDEAGQLIPLLL--DVQP---- 268
WP_041695100 204 AQ-EGam-aVpa---------------aLAEDGLr-VRg-QVD-VTRLRAYQDGYVTLQDEGAMLVAPLL--RSEP---- 257
WP_012864311 207 ED-LDwi-vEqd---------------tYIPEVVy-IDghQGH-LEKAKPVLDGHITFMDKASMLVAHVV--DPQP---- 261
WP_111333644 199 -P-EGvspaQfgd-------------hpAIPGAY--LAe-SID-DTVRKGLEQGEWVVQDLGSQLIGYYT--GANE---- 253
WP_013181249 201 DflAGt---R-------------------C--GMgvIRd-P-SlISNI--SSSSDYYIQNATPAELMSSLaqDFGA---- 248
WP_013120655 200 AG-EGve-cRkg---------------eFAPETIn-ISg-FKS-IASLKSHAQGLYLVQDESSTMVGHIV--APKP---- 253
WP_013842312 202 AE-EGve-aRes---------------qYVPEGLh-INg-FLS-YRSLDSFKEGLFQVQDESSMLVAHAL--NPAS---- 255
WP_006288715 305 fptdlptdfpvdlpadsqsdlttsrqAeRWLDMCAGPGGKTALLaACALSRsnsgrlTTLLANEPTHHRADLVRDNLCAF 384
WP_085756623 268 --------------------------GqRILDLCSAPGTKSSHLaELMQGQ------GEVISTDINPARLEKARENKQRL 315
WP_013498475 251 --------------------------GdIVLDLCSAPGGKTFTIaEMMNNE------GKVLAFDLHPNRVKLIRSGAERL 298
WP_083817245 269 --------------------------GqRALDACAAPGGKATHLaALMENQ------GEIVAVDRVSSRLDLVMANCRRL 316
WP_041695100 258 --------------------------GmRVVDLCAAPGGKTTHLaELMGDR------GEIDAYDVTVAKVRAVRQQAERL 305
WP_012864311 262 --------------------------GeRILDCCAAPGGKSMHMaSLMNNT------GAIMSCDIYDHKLELINQNAERL 309
WP_111333644 254 --------------------------GmSVLDACAGLGGKTLHLaDLVGQT------GTVNAVDPVQSKLQMLRESAEQT 301
WP_013181249 249 --------------------------PkNILDLCSSPGGKLILAhDLY-PD------AELSANDVSSGKLKPLSENCAKY 295
WP_013120655 254 --------------------------GsKVIDACSAPGGKTTHLaQLMNNQ------GRILAGDIHQHKMGLIKENCSRL 301
WP_013842312 256 --------------------------GaKVLDVASAPGGKTTHVaQLMGDS------GEIIAVDIHSHKLELIKENCVRL 303
WP_006288715 385 tgmapassaAPSi-IEgV--------EEKDGRQ-L------G-DLYP-QAFDRILVDAPCSGLGSLRRRPESRWRKKPEE 446
WP_085756623 316 ---------RLDn-IT-V----------LDyEQaF--------QYAAdRQIDAVLLDVPCSNSGVLSKRLDMRYRLRPEG 366
WP_013498475 299 ---------GLTc-VT-A--------DVNNAKI-F------N-SDI--PVADKVLVDAPCSGLGVIRRKPEIKY-KDPSE 348
WP_083817245 317 ---------GVKi-LT-P--------LAGDLRA-LvgaeiaShPMLS-RPFDRILLDAPCSGLGVLRRHPEGKWYKTPES 375
WP_041695100 306 ---------GLRs-IH-P--------RLGDGRQ-V------E-P--E-EPYDAALVDAPCTGLGVMRRRPDLRYRRRPED 355
WP_012864311 310 ---------GVSi-IS-T--------KLQDGRY-L------P-DNWK-EQFDRVLVDAPCSGLGILQKKLDMRWRKTESL 361
WP_111333644 302 ---------GLLprIA-ThkqelqgyIDADATR-----------DAP-KEFDLVLLDAPCSGLGVIRRHPETRWRREKSD 359
WP_013181249 296 ---------GISt--T-L--------SSVRGEE-F------P---LA-QKFDLVILDVPCSNTGVLNKRPEARWRLSQKT 344
WP_013120655 302 ---------GVNi-IE-P--------ALVDARE-L------H-KEYK-EWADFVLVDAPCSGLGVLRRRPELRWRKTVNR 353
WP_013842312 304 ---------GITs-IH-G--------LVADARD-L------P-QKYS-GWADYVLVDAPCSGLGVLRRRPDSRWRRDPCQ 355
WP_006288715 447 IASLSLLQGQLLDSAYEALAPGGYLAYVTCSPVLEETRLVVDAFLGRHQ--Dli-rlDARqafpsg----tplpaAP-G- 517
WP_085756623 367 IKQLNSQQYDIIKTVLTRLPAVKKLFYSTCSVEKSENYGILHKLLCELD--Rga-irR---------------------- 421
WP_013498475 349 FDRLPEIQGDILDTASKYVKANGTLVYSTCTVSKAENDDVIRKFLGSHK--Dfv-paEd----------------EE-Tf 408
WP_083817245 376 IAQHRRMQVELLAVTSRLLRPGGVLVYSACSIEPEETESIIDEFCQAHH--Qfq-reSIApwlppa---glpfvtPR-G- 447
WP_041695100 356 VAQLAKLQQSLLRRACAIVRSGGCVVYSTCTLLNEENESVVREVASD-PavGvr-ieDIGgdlapal--atrvgeRTaG- 430
WP_012864311 362 LIELPPLQLEILEKASKMVKVNGYLVYSTCTMNSGENEAVLNKFLAIHK--Nfi-idPVSykga--------pqaiD-G- 428
WP_111333644 360 IIELAEIQKKLLEVAAGLTKSGGILAYSVCTFTREEGAGQVASFLEEHP--EfeligP-PtegpgaqidwapylnDD-G- 434
WP_013181249 345 LEQLEEIQLQLLRRGIELLDKGGELWYLTCSVLKRENGRLIDKVCQELSlet---rlK---------------------- 399
WP_013120655 354 FDELTALQLAILRSAAQCVKAGGVLVYSTCTVNRRENLDLVRSFLENAP--Efr-ldSLLplfpdtcdrtkfptaAE-G- 428
WP_013842312 356 LPGVVRLQKDILQAAGRCLRPGGVLIYSTCTITREENLGVVEDFLAGNP--Efi-mgDLRqvlppgl--dqeptaEK-G- 428
WP_006288715 518 DVQL-FEQ-VH-GTDQMFISLMRKAV 540
WP_085756623 422 -TKLtLPSdVSfGRDGGYIAEFTl-- 444
WP_013498475 409 MQTI-TPD-MY-GSDGFFIAKLKRLG 431
WP_083817245 448 DLST-MAN-SK-RMDLFFAARVRRSE 470
WP_041695100 431 -FLL-WPD-WH-ETDGFFMARLRRI- 451
WP_012864311 429 MITT-YPP-RD-HMDGFFMARMKRLS 451
WP_111333644 435 QLFL-NPL-EH-GTDGFFAARLRRR- 456
WP_013181249 400 -EAI-LPN-AD-GWDGGFGCALRKIG 421
WP_013120655 429 YIQF-LPH-VH-GTDGFFAARMVKEG 451
WP_013842312 429 YLQL-LPH-IH-GTDGFFIARLRKKG 451
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