Conserved Protein Domain Family
serpinA9_centerin

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cd19556: serpinA9_centerin 
serpin family A member 9, centerin
Centerin, also known as germinal center B-cell-expressed transcript 1/GCET1, is a serpin whose expression is restricted to germinal center B-cells and lymphoid malignancies with germinal center B-cell maturation. Expression of centerin, together with bcl-6 and GCET2, constitutes a germinal center B-cell signature, which is associated with a good prognosis in diffuse large B-cell lymphomas. Centerin is thought to function in vivo in the germinal centre as an efficient inhibitor of a trypsin-like protease. It also inhibits the trypsin-like serine proteases trypsin, thrombin and plasmin and is able to bind heparin and DNA. The centerin gene maps to the A clade serpin cluster on chromosome 14q32.1, which also contains a1-antitrypsin and a1-antichymotrypsin together with seven other serpins. The clade A of the serpin superfamily includes the classical serine proteinase inhibitors, alpha-1-antitrypsin and alpha-1-antichymotrypsin, protein C inhibitor, kallistatin, and non-inhibitory serpins, like corticosteroid and thyroxin binding globulins. In general, SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia. A classification based on evolutionary relatedness has resulted in the assignment of serpins to 16 clades designated A-P along with some orphans.
Statistics
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PSSM-Id: 381024
Aligned: 4 rows
Threshold Bit Score: 731.449
Created: 18-Apr-2018
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
reactive center
Feature 1:reactive center loop (RCL)
Evidence:
  • Comment:depending on the conformational state, the RC loop is surface accessible in the active form or buried and inserted as the central beta strand in the inactive form.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
Q86WD7        30 YPRPSSTKSTPASQVYSLNTDFAFRLYRRLVLETPSQNIFFSPVSVSTSLAMLSLGAHSVTKTQILQGLGFNLTHTPESA 109 human
Q9D7D2        32 SSHLPSMKKNPASQVSPSNTRFSFLLYQRLAQENPGQNILFSPVSISTSLAMLSLGARSATKTQILRTLGFNFTWVSEPT 111 house mouse
AAO65242      48 YPRPSSTKSTPASQVYSLNTDFAFRLYRRLVLETPSQNIFFSPVSVSTSLAMLSLGAHSVTKTQILQGLGFNLTHTPESA 127 human
NP_001271204  12 VRRELQPSKQVSGLTNHARTGQEKRNLQRLVLETPSQNIFFSPVSVSTSLAMLSLGAHSVTKTQILQGLGFNLTHTPESA 91  Homo sapiens
Feature 1                                                                                        
Q86WD7       110 IHQGFQHLVHSLTVPSKDLTLKMGSALFVKKELQLQANFLGNVKRLYEAEVFSTDFSNPSIAQARINSHVKKKTQGKVVD 189 human
Q9D7D2       112 IHMGFEYLVRSLNKCHQGRELRMGSVLFIRKELQLQATFLDRVKKLYGAKVFSEDFSNAATAQAQINSYVEKETKGKVVD 191 house mouse
AAO65242     128 IHQGFQHLVHSLTVPSKDLTLKMGSALFVKKELQLQANFLGNVKRLYEAEVFSTDFSNPSIAQARINSHVKKKTQGKVVD 207 human
NP_001271204  92 IHQGFQHLVHSLTVPSKDLTLKMGSALFVKKELQLQANFLGNVKRLYEAEVFSTDFSNPSIAQARINSHVKKKTQGKVVD 171 Homo sapiens
Feature 1                                                                                        
Q86WD7       190 IIQGLDLLTAMVLVNHIFFKAKWEKPFHPEYTRKNFPFLVGEQVTVHVPMMHQKEQFAFGVDTELNCFVLQMDYKGDAVA 269 human
Q9D7D2       192 VIQDLDSQTAMVLVNHIFFKANWTQPFSTANTNKSFPFLLSKGTTVHVPMMHQTESFAFGVDKELGCSILQMDYRGDAVA 271 house mouse
AAO65242     208 IIQGLDLLTAMVLVNHIFFKAKWEKPFHPEYTRKDFPFLVGEQVTVHVPMMHQKEQFAFGVDTELNCFVLQMDYKGDAVA 287 human
NP_001271204 172 IIQGLDLLTAMVLVNHIFFKAKWEKPFHPEYTRKNFPFLVGEQVTVHVPMMHQKEQFAFGVDTELNCFVLQMDYKGDAVA 251 Homo sapiens
Feature 1                                                                                        
Q86WD7       270 FFVLPSKGKMRQLEQALSARTLRKWSHSLQKRWIEVFIPRFSISASYNLETILPKMGIQNVFDKNADFSGIAKRdsLQVS 349 human
Q9D7D2       272 FFVLPGKGKMRQLEKSLSARRLRKWSRSLQKRWIKVFIPKFSISASYNLETILPKMGIRDAFNSNADFSGITKThfLQVS 351 house mouse
AAO65242     288 FFVLPSKGKMRQLEQALSARTLRKWSHSLQKRWIEVFIPRFSISASYNLETILPKMGIQNAFDKNADFSGIAKRdsLQVS 367 human
NP_001271204 252 FFVLPSKGKMRQLEQALSARTLRKWSHSLQKRWIEVFIPRFSISASYNLETILPKMGIQNVFDKNADFSGIAKRdsLQVS 331 Homo sapiens
Feature 1                   ######################### ######                         
Q86WD7       350 KATHKAVLDVSEEGTEATAATTTKFIVRSKDGPSYFtVSFNRTFLMMITNKATDGILFLGKVENPTKS 417 human
Q9D7D2       352 KAAHKAVLDVSEEGTEAAAATTTKLIVRSRDTPSSI-IAFKEPFLILLLDKNTESVLFLGKVENPRKM 418 house mouse
AAO65242     368 KATHKAVLDVSEEGTEATAATATKFIVRSKDGPSYFtVSFNRTFLMMITNKATDGILFLGKVENPTKS 435 human
NP_001271204 332 KATHKAVLDVSEEGTEATAATTTKFIVRSKDGPSYFtVSFNRTFLMMITNKATDGILFLGKVENPTKS 399 Homo sapiens

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